| MMDBm0000003 | Acidaminococcus fermentans DSM 20731 | Not Available | Firmicutes | Pig | Metabolic reconstruction | VMH |
| MMDBm0000004 | Acidaminococcus intestini RyC-MR95 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000021 | Anaerostipes caccae | Not Available | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0000024 | Bacillus altitudinis 41KF2b | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000025 | Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000028 | Bacillus halodurans C-125 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000032 | Bacillus timonensis 10403023 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000033 | Bacillus vallismortis DV1-F-3 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000093 | Blautia obeum A2-162 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000094 | Blautia obeum ATCC 29174 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000096 | Brevibacillus borstelensis AK1 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000120 | Clostridium botulinum A str. ATCC 19397 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000121 | Clostridium botulinum Bf | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000122 | Clostridium botulinum F str. 230613 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000125 | Clostridium clostridioforme CM201 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000138 | Clostridium sporogenes | Not Available | Firmicutes | Human Vaginal secretion | Microbial culture | Not Available |
| MMDBm0000143 | Coprococcus catus GD/7 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000147 | Dorea formicigenerans ATCC 27755 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000172 | Eubacterium limosum KIST612 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000173 | Eubacterium rectale ATCC 33656 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
