| MMDBm0000003 | Acidaminococcus fermentans DSM 20731 | Not Available | Firmicutes | Pig | Metabolic reconstruction | VMH |
| MMDBm0000025 | Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000028 | Bacillus halodurans C-125 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000032 | Bacillus timonensis 10403023 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000033 | Bacillus vallismortis DV1-F-3 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000094 | Blautia obeum ATCC 29174 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000096 | Brevibacillus borstelensis AK1 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000120 | Clostridium botulinum A str. ATCC 19397 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000121 | Clostridium botulinum Bf | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000122 | Clostridium botulinum F str. 230613 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000125 | Clostridium clostridioforme CM201 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000134 | Clostridium saccharolyticum | Not Available | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000147 | Dorea formicigenerans ATCC 27755 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000187 | Gemella sanguinis ATCC700632 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000226 | Paenibacillus alvei DSM 29 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000227 | Paenibacillus barengoltzii G22 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000228 | Paenibacillus daejeonensis DSM 15491 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000269 | Stoquefichus massiliensis AP9 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000464 | Bacillus mycoides | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000767 | Bacillus pseudofirmus | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
