| MMDBm0000010 | Aeromonas jandaei Riv2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000011 | Aggregatibacter aphrophilus NJ8700 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000012 | Agrobacterium tumefaciens F2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000095 | Bradyrhizobium elkanii USDA 76 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000105 | Citrobacter freundii ATCC 8090 = MTCC 1658 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000159 | Escherichia | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000162 | Escherichia coli CFT073 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000166 | Escherichia coli SE15 | Not Available | Proteobacteria | Human Feces | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000169 | Escherichia coli UTI89 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000190 | Haemophilus parainfluenzae T3T1 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000197 | Klebsiella variicola At-22 | Not Available | Proteobacteria | Human Feces | Not Available | RHEA |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000222 | Ochrobactrum intermedium LMG 3301 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000288 | Vibrio mimicus MB-451 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000337 | Ralstonia pickettii | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000368 | Shigella flexneri | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000664 | Bilophila wadsworthia | Not Available | Proteobacteria | Not Available | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001067 | Klebsiella variicola | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001144 | Burkholderiales bacterium 1_1_47 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001166 | Achromobacter xylosoxidans A8 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001178 | Acidovorax citrulli AAC00-1 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001179 | Acidovorax sp. JS42 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
