MiMeDB: Showing metabocard for 7-Ketodeoxycholic acid (MMDBc0000100)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2020-10-27 23:35:53 UTC

Update Date

2022-08-30 23:34:16 UTC

Metabolite ID

MMDBc0000100

Metabolite Identification

Common Name

7-Ketodeoxycholic acid

Description

7-Ketodeoxycholic acid is a bile acid. Bile acids are steroid acids found predominantly in the bile of mammals. The distinction between different bile acids is minute, depending only on the presence or absence of hydroxyl groups on positions 3, 7, and 12. Bile acids are physiological detergents that facilitate excretion, absorption, and transport of fats and sterols in the intestine and liver. Bile acids are also steroidal amphipathic molecules derived from the catabolism of cholesterol. They modulate bile flow and lipid secretion, are essential for the absorption of dietary fats and vitamins, and have been implicated in the regulation of all the key enzymes involved in cholesterol homeostasis. Bile acids recirculate through the liver, bile ducts, small intestine and portal vein to form an enterohepatic circuit. They exist as anions at physiological pH and, consequently, require a carrier for transport across the membranes of the enterohepatic tissues. The unique detergent properties of bile acids are essential for the digestion and intestinal absorption of hydrophobic nutrients. Bile acids have potent toxic properties (e.g. membrane disruption) and there are a plethora of mechanisms to limit their accumulation in blood and tissues (PMID: 11316487 ; 16037564; 12576301; 11907135 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 02231218302D          

 33 36  0  0  1  0            999 V2000
    9.6040   -6.2419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6040   -7.0669    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.3185   -7.4794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0330   -7.0669    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.0330   -6.2419    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.3185   -5.8294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7475   -7.4794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4619   -7.0669    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7475   -5.8294    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.1764   -5.8294    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.1764   -5.0044    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.4619   -4.5919    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.7475   -5.0044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9610   -6.0843    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4459   -5.4169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0756   -4.8258    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.3297   -4.0438    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.1340   -3.8729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3880   -3.0909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1923   -2.9200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4051   -2.1257    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7777   -3.5054    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.1770   -7.4812    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.0098   -5.4465    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0331   -7.8936    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1770   -4.1815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8074   -7.2809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.4619   -6.2419    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.3906   -5.5240    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1819   -6.5441    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4083   -3.7966    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.6887   -3.4028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7191   -6.6100    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  1  1  0  0  0  0
  4  7  1  0  0  0  0
  7  8  1  0  0  0  0
  9  5  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13  9  1  0  0  0  0
 10 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 11  1  0  0  0  0
 16 17  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
  8 23  2  0  0  0  0
  5 24  1  1  0  0  0
  4 25  1  1  0  0  0
 11 26  1  1  0  0  0
  2 27  1  6  0  0  0
  9 28  1  0  0  0  0
 28  8  1  0  0  0  0
 28 10  1  0  0  0  0
 28 29  1  1  0  0  0
 10 30  1  6  0  0  0
 12 31  1  6  0  0  0
 17 32  1  6  0  0  0
  9 33  1  6  0  0  0
M  END

HMDB0000391
     RDKit          3D
7-Ketodeoxycholic acid
 67 70  0  0  0  0  0  0  0  0999 V2000
    3.4817   -2.1324    1.1246 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7358   -0.7772    0.4203 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9125   -0.2976    1.1811 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5873    0.9609    0.8895 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1802    1.0821   -0.4598 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0835    0.1400   -1.2634 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8331    2.2362   -0.8128 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5220    0.0703    0.4415 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7454    1.3678   -0.2844 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3821    1.7424   -0.9114 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4736    0.8951   -0.1080 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9102    0.7821   -0.5796 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6532    2.0058   -0.0993 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1486    3.1056   -0.0535 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0493    1.8101    0.3226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7203    0.8259   -0.6061 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.1864    0.6613   -0.2946 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4436   -0.0764    0.9856 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.6043    0.7755    2.0750 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3831   -1.1301    1.2596 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8533   -1.5737   -0.0726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9942   -0.4812   -0.7219 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8595   -0.8905   -2.1794 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6659   -0.3893   -0.0395 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8533   -1.6289   -0.0644 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4246   -1.3276    0.7361 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0184   -0.5679    1.8408 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2631   -0.4349   -0.1237 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3172   -0.8488   -1.5571 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9897   -2.0001    2.0958 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0234   -2.8520    0.4332 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4899   -2.5425    1.3258 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0069   -1.0261   -0.6103 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7023   -0.3111    2.3043 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7033   -1.1180    1.1109 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5245    0.9591    1.5615 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1012    1.9009    1.2297 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6156    3.1042   -0.3265 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3025    0.2685    1.5439 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4698    1.1721   -1.1098 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9808    2.2275    0.3359 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4484    1.4853   -1.9731 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1807    2.8187   -0.8510 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4886    1.2542    0.9409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0293    0.8190   -1.6993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1589    1.5387    1.3880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5842    2.7822    0.1897 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6834    1.3150   -1.6229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6024    1.6894   -0.1677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6699    0.1821   -1.1723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4020   -0.6248    0.8668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5656    1.7183    1.8512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6065   -0.7657    1.9538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8506   -2.0081    1.7398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3491   -2.5366   -0.0714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7405   -1.6742   -0.7563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1012   -1.6487   -2.3526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8636   -1.2323   -2.5370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6528    0.0410   -2.7648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8859   -0.1568    1.0433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3497   -2.4581    0.4769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5700   -1.9900   -1.0487 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8283   -2.2790    1.0289 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1981   -1.0675    2.6607 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4386   -0.5181   -2.1496 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2121   -0.4196   -2.0663 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3625   -1.9518   -1.7000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  2  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  6
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  6
 28  8  1  0
 28 11  1  0
 24 12  1  0
 22 16  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  2 33  1  6
  3 34  1  0
  3 35  1  0
  4 36  1  0
  4 37  1  0
  7 38  1  0
  8 39  1  1
  9 40  1  0
  9 41  1  0
 10 42  1  0
 10 43  1  0
 11 44  1  1
 12 45  1  6
 15 46  1  0
 15 47  1  0
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 17 50  1  0
 18 51  1  6
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 23 57  1  0
 23 58  1  0
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 25 61  1  0
 25 62  1  0
 26 63  1  1
 27 64  1  0
 29 65  1  0
 29 66  1  0
 29 67  1  0
M  END


  Mrv0541 02231218302D          

 33 36  0  0  1  0            999 V2000
    9.6040   -6.2419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6040   -7.0669    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.3185   -7.4794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0330   -7.0669    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.0330   -6.2419    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.3185   -5.8294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7475   -7.4794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4619   -7.0669    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7475   -5.8294    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.1764   -5.8294    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.1764   -5.0044    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.4619   -4.5919    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.7475   -5.0044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9610   -6.0843    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4459   -5.4169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0756   -4.8258    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.3297   -4.0438    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.1340   -3.8729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3880   -3.0909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1923   -2.9200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4051   -2.1257    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7777   -3.5054    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.1770   -7.4812    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.0098   -5.4465    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0331   -7.8936    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1770   -4.1815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8074   -7.2809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.4619   -6.2419    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.3906   -5.5240    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1819   -6.5441    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4083   -3.7966    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.6887   -3.4028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7191   -6.6100    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  1  1  0  0  0  0
  4  7  1  0  0  0  0
  7  8  1  0  0  0  0
  9  5  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13  9  1  0  0  0  0
 10 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 11  1  0  0  0  0
 16 17  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
  8 23  2  0  0  0  0
  5 24  1  1  0  0  0
  4 25  1  1  0  0  0
 11 26  1  1  0  0  0
  2 27  1  6  0  0  0
  9 28  1  0  0  0  0
 28  8  1  0  0  0  0
 28 10  1  0  0  0  0
 28 29  1  1  0  0  0
 10 30  1  6  0  0  0
 12 31  1  6  0  0  0
 17 32  1  6  0  0  0
  9 33  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0000100

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@]12CC[C@H]([C@H](C)CCC(O)=O)[C@@]1(C)[C@@H](O)C[C@@]1([H])[C@@]2([H])C(=O)C[C@]2([H])C[C@H](O)CC[C@]12C

> <INCHI_IDENTIFIER>
InChI=1S/C24H38O5/c1-13(4-7-21(28)29)16-5-6-17-22-18(12-20(27)24(16,17)3)23(2)9-8-15(25)10-14(23)11-19(22)26/h13-18,20,22,25,27H,4-12H2,1-3H3,(H,28,29)/t13-,14+,15-,16-,17+,18+,20+,22+,23+,24-/m1/s1

> <INCHI_KEY>
RHCPKKNRWFXMAT-RRWYKFPJSA-N

> <FORMULA>
C24H38O5

> <MOLECULAR_WEIGHT>
406.5555

> <EXACT_MASS>
406.271924326

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_AVERAGE_POLARIZABILITY>
46.21580885416091

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4R)-4-[(1S,2S,5R,7S,10R,11S,14R,15R,16S)-5,16-dihydroxy-2,15-dimethyl-9-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl]pentanoic acid

> <ALOGPS_LOGP>
2.61

> <JCHEM_LOGP>
2.8680087103333336

> <ALOGPS_LOGS>
-3.99

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
18.361716908839632

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.437955163437767

> <JCHEM_PKA_STRONGEST_BASIC>
-0.3259310991429306

> <JCHEM_POLAR_SURFACE_AREA>
94.83

> <JCHEM_REFRACTIVITY>
109.86409999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.14e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7-ketodeoxycholic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0000391
     RDKit          3D
7-Ketodeoxycholic acid
 67 70  0  0  0  0  0  0  0  0999 V2000
    3.4817   -2.1324    1.1246 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7358   -0.7772    0.4203 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9125   -0.2976    1.1811 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5873    0.9609    0.8895 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1802    1.0821   -0.4598 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0835    0.1400   -1.2634 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8331    2.2362   -0.8128 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5220    0.0703    0.4415 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7454    1.3678   -0.2844 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3821    1.7424   -0.9114 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4736    0.8951   -0.1080 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9102    0.7821   -0.5796 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6532    2.0058   -0.0993 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1486    3.1056   -0.0535 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0493    1.8101    0.3226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7203    0.8259   -0.6061 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.1864    0.6613   -0.2946 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4436   -0.0764    0.9856 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.6043    0.7755    2.0750 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3831   -1.1301    1.2596 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8533   -1.5737   -0.0726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9942   -0.4812   -0.7219 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8595   -0.8905   -2.1794 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6659   -0.3893   -0.0395 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8533   -1.6289   -0.0644 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4246   -1.3276    0.7361 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0184   -0.5679    1.8408 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2631   -0.4349   -0.1237 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3172   -0.8488   -1.5571 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9897   -2.0001    2.0958 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0234   -2.8520    0.4332 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4899   -2.5425    1.3258 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0069   -1.0261   -0.6103 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7023   -0.3111    2.3043 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7033   -1.1180    1.1109 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5245    0.9591    1.5615 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1012    1.9009    1.2297 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6156    3.1042   -0.3265 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3025    0.2685    1.5439 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4698    1.1721   -1.1098 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9808    2.2275    0.3359 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4484    1.4853   -1.9731 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1807    2.8187   -0.8510 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4886    1.2542    0.9409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0293    0.8190   -1.6993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1589    1.5387    1.3880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5842    2.7822    0.1897 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6834    1.3150   -1.6229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6024    1.6894   -0.1677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6699    0.1821   -1.1723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4020   -0.6248    0.8668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5656    1.7183    1.8512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6065   -0.7657    1.9538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8506   -2.0081    1.7398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3491   -2.5366   -0.0714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7405   -1.6742   -0.7563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1012   -1.6487   -2.3526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8636   -1.2323   -2.5370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6528    0.0410   -2.7648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8859   -0.1568    1.0433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3497   -2.4581    0.4769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5700   -1.9900   -1.0487 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8283   -2.2790    1.0289 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1981   -1.0675    2.6607 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4386   -0.5181   -2.1496 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2121   -0.4196   -2.0663 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3625   -1.9518   -1.7000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  2  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  6
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  6
 28  8  1  0
 28 11  1  0
 24 12  1  0
 22 16  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  2 33  1  6
  3 34  1  0
  3 35  1  0
  4 36  1  0
  4 37  1  0
  7 38  1  0
  8 39  1  1
  9 40  1  0
  9 41  1  0
 10 42  1  0
 10 43  1  0
 11 44  1  1
 12 45  1  6
 15 46  1  0
 15 47  1  0
 16 48  1  6
 17 49  1  0
 17 50  1  0
 18 51  1  6
 19 52  1  0
 20 53  1  0
 20 54  1  0
 21 55  1  0
 21 56  1  0
 23 57  1  0
 23 58  1  0
 23 59  1  0
 24 60  1  1
 25 61  1  0
 25 62  1  0
 26 63  1  1
 27 64  1  0
 29 65  1  0
 29 66  1  0
 29 67  1  0
M  END

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  C   UNK     0      17.927 -11.652   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      17.927 -13.192   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      19.261 -13.962   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      20.595 -13.192   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      20.595 -11.652   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      19.261 -10.882   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      21.929 -13.962   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      23.262 -13.192   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      21.929 -10.882   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      24.596 -10.882   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      24.596  -9.342   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      23.262  -8.572   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      21.929  -9.342   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      26.061 -11.357   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      26.966 -10.112   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      26.274  -9.008   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      26.749  -7.548   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      28.250  -7.229   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      28.724  -5.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      30.226  -5.451   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      30.623  -3.968   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      31.318  -6.543   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      24.597 -13.965   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      20.552 -10.167   0.000  0.00  0.00           C+0
HETATM   25  H   UNK     0      20.595 -14.735   0.000  0.00  0.00           H+0
HETATM   26  C   UNK     0      24.597  -7.805   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      16.440 -13.591   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      23.262 -11.652   0.000  0.00  0.00           C+0
HETATM   29  H   UNK     0      23.129 -10.311   0.000  0.00  0.00           H+0
HETATM   30  H   UNK     0      24.606 -12.216   0.000  0.00  0.00           H+0
HETATM   31  O   UNK     0      23.162  -7.087   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      25.552  -6.352   0.000  0.00  0.00           C+0
HETATM   33  H   UNK     0      21.876 -12.339   0.000  0.00  0.00           H+0
CONECT    1    2    6                                                       
CONECT    2    1    3   27                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    7   25                                             
CONECT    5    4    6    9   24                                             
CONECT    6    5    1                                                       
CONECT    7    4    8                                                       
CONECT    8    7   23   28                                                  
CONECT    9    5   13   28   33                                             
CONECT   10   11   14   28   30                                             
CONECT   11   10   12   16   26                                             
CONECT   12   11   13   31                                                  
CONECT   13   12    9                                                       
CONECT   14   10   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11   17                                                  
CONECT   17   16   18   32                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23    8                                                            
CONECT   24    5                                                            
CONECT   25    4                                                            
CONECT   26   11                                                            
CONECT   27    2                                                            
CONECT   28    9    8   10   29                                             
CONECT   29   28                                                            
CONECT   30   10                                                            
CONECT   31   12                                                            
CONECT   32   17                                                            
CONECT   33    9                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   72    0
END

COMPND    HMDB0000391
HETATM    1  C1  UNL     1       3.482  -2.132   1.125  1.00  0.00           C  
HETATM    2  C2  UNL     1       3.736  -0.777   0.420  1.00  0.00           C  
HETATM    3  C3  UNL     1       4.912  -0.298   1.181  1.00  0.00           C  
HETATM    4  C4  UNL     1       5.587   0.961   0.889  1.00  0.00           C  
HETATM    5  C5  UNL     1       6.180   1.082  -0.460  1.00  0.00           C  
HETATM    6  O1  UNL     1       6.083   0.140  -1.263  1.00  0.00           O  
HETATM    7  O2  UNL     1       6.833   2.236  -0.813  1.00  0.00           O  
HETATM    8  C6  UNL     1       2.522   0.070   0.442  1.00  0.00           C  
HETATM    9  C7  UNL     1       2.745   1.368  -0.284  1.00  0.00           C  
HETATM   10  C8  UNL     1       1.382   1.742  -0.911  1.00  0.00           C  
HETATM   11  C9  UNL     1       0.474   0.895  -0.108  1.00  0.00           C  
HETATM   12  C10 UNL     1      -0.910   0.782  -0.580  1.00  0.00           C  
HETATM   13  C11 UNL     1      -1.653   2.006  -0.099  1.00  0.00           C  
HETATM   14  O3  UNL     1      -1.149   3.106  -0.054  1.00  0.00           O  
HETATM   15  C12 UNL     1      -3.049   1.810   0.323  1.00  0.00           C  
HETATM   16  C13 UNL     1      -3.720   0.826  -0.606  1.00  0.00           C  
HETATM   17  C14 UNL     1      -5.186   0.661  -0.295  1.00  0.00           C  
HETATM   18  C15 UNL     1      -5.444  -0.076   0.986  1.00  0.00           C  
HETATM   19  O4  UNL     1      -5.604   0.776   2.075  1.00  0.00           O  
HETATM   20  C16 UNL     1      -4.383  -1.130   1.260  1.00  0.00           C  
HETATM   21  C17 UNL     1      -3.853  -1.574  -0.073  1.00  0.00           C  
HETATM   22  C18 UNL     1      -2.994  -0.481  -0.722  1.00  0.00           C  
HETATM   23  C19 UNL     1      -2.859  -0.891  -2.179  1.00  0.00           C  
HETATM   24  C20 UNL     1      -1.666  -0.389  -0.040  1.00  0.00           C  
HETATM   25  C21 UNL     1      -0.853  -1.629  -0.064  1.00  0.00           C  
HETATM   26  C22 UNL     1       0.425  -1.328   0.736  1.00  0.00           C  
HETATM   27  O5  UNL     1      -0.018  -0.568   1.841  1.00  0.00           O  
HETATM   28  C23 UNL     1       1.263  -0.435  -0.124  1.00  0.00           C  
HETATM   29  C24 UNL     1       1.317  -0.849  -1.557  1.00  0.00           C  
HETATM   30  H1  UNL     1       2.990  -2.000   2.096  1.00  0.00           H  
HETATM   31  H2  UNL     1       3.023  -2.852   0.433  1.00  0.00           H  
HETATM   32  H3  UNL     1       4.490  -2.542   1.326  1.00  0.00           H  
HETATM   33  H4  UNL     1       4.007  -1.026  -0.610  1.00  0.00           H  
HETATM   34  H5  UNL     1       4.702  -0.311   2.304  1.00  0.00           H  
HETATM   35  H6  UNL     1       5.703  -1.118   1.111  1.00  0.00           H  
HETATM   36  H7  UNL     1       6.524   0.959   1.562  1.00  0.00           H  
HETATM   37  H8  UNL     1       5.101   1.901   1.230  1.00  0.00           H  
HETATM   38  H9  UNL     1       6.616   3.104  -0.327  1.00  0.00           H  
HETATM   39  H10 UNL     1       2.302   0.269   1.544  1.00  0.00           H  
HETATM   40  H11 UNL     1       3.470   1.172  -1.110  1.00  0.00           H  
HETATM   41  H12 UNL     1       2.981   2.228   0.336  1.00  0.00           H  
HETATM   42  H13 UNL     1       1.448   1.485  -1.973  1.00  0.00           H  
HETATM   43  H14 UNL     1       1.181   2.819  -0.851  1.00  0.00           H  
HETATM   44  H15 UNL     1       0.489   1.254   0.941  1.00  0.00           H  
HETATM   45  H16 UNL     1      -1.029   0.819  -1.699  1.00  0.00           H  
HETATM   46  H17 UNL     1      -3.159   1.539   1.388  1.00  0.00           H  
HETATM   47  H18 UNL     1      -3.584   2.782   0.190  1.00  0.00           H  
HETATM   48  H19 UNL     1      -3.683   1.315  -1.623  1.00  0.00           H  
HETATM   49  H20 UNL     1      -5.602   1.689  -0.168  1.00  0.00           H  
HETATM   50  H21 UNL     1      -5.670   0.182  -1.172  1.00  0.00           H  
HETATM   51  H22 UNL     1      -6.402  -0.625   0.867  1.00  0.00           H  
HETATM   52  H23 UNL     1      -5.566   1.718   1.851  1.00  0.00           H  
HETATM   53  H24 UNL     1      -3.606  -0.766   1.954  1.00  0.00           H  
HETATM   54  H25 UNL     1      -4.851  -2.008   1.740  1.00  0.00           H  
HETATM   55  H26 UNL     1      -3.349  -2.537  -0.071  1.00  0.00           H  
HETATM   56  H27 UNL     1      -4.740  -1.674  -0.756  1.00  0.00           H  
HETATM   57  H28 UNL     1      -2.101  -1.649  -2.353  1.00  0.00           H  
HETATM   58  H29 UNL     1      -3.864  -1.232  -2.537  1.00  0.00           H  
HETATM   59  H30 UNL     1      -2.653   0.041  -2.765  1.00  0.00           H  
HETATM   60  H31 UNL     1      -1.886  -0.157   1.043  1.00  0.00           H  
HETATM   61  H32 UNL     1      -1.350  -2.458   0.477  1.00  0.00           H  
HETATM   62  H33 UNL     1      -0.570  -1.990  -1.049  1.00  0.00           H  
HETATM   63  H34 UNL     1       0.828  -2.279   1.029  1.00  0.00           H  
HETATM   64  H35 UNL     1       0.198  -1.067   2.661  1.00  0.00           H  
HETATM   65  H36 UNL     1       0.439  -0.518  -2.150  1.00  0.00           H  
HETATM   66  H37 UNL     1       2.212  -0.420  -2.066  1.00  0.00           H  
HETATM   67  H38 UNL     1       1.363  -1.952  -1.700  1.00  0.00           H  
CONECT    1    2   30   31   32
CONECT    2    3    8   33
CONECT    3    4   34   35
CONECT    4    5   36   37
CONECT    5    6    6    7
CONECT    7   38
CONECT    8    9   28   39
CONECT    9   10   40   41
CONECT   10   11   42   43
CONECT   11   12   28   44
CONECT   12   13   24   45
CONECT   13   14   14   15
CONECT   15   16   46   47
CONECT   16   17   22   48
CONECT   17   18   49   50
CONECT   18   19   20   51
CONECT   19   52
CONECT   20   21   53   54
CONECT   21   22   55   56
CONECT   22   23   24
CONECT   23   57   58   59
CONECT   24   25   60
CONECT   25   26   61   62
CONECT   26   27   28   63
CONECT   27   64
CONECT   28   29
CONECT   29   65   66   67
END

HMDB0000391
     RDKit          3D
7-Ketodeoxycholic acid
 67 70  0  0  0  0  0  0  0  0999 V2000
    3.4817   -2.1324    1.1246 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7358   -0.7772    0.4203 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9125   -0.2976    1.1811 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5873    0.9609    0.8895 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1802    1.0821   -0.4598 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0835    0.1400   -1.2634 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8331    2.2362   -0.8128 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5220    0.0703    0.4415 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7454    1.3678   -0.2844 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3821    1.7424   -0.9114 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4736    0.8951   -0.1080 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9102    0.7821   -0.5796 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6532    2.0058   -0.0993 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1486    3.1056   -0.0535 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0493    1.8101    0.3226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7203    0.8259   -0.6061 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.1864    0.6613   -0.2946 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4436   -0.0764    0.9856 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.6043    0.7755    2.0750 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3831   -1.1301    1.2596 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8533   -1.5737   -0.0726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9942   -0.4812   -0.7219 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8595   -0.8905   -2.1794 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6659   -0.3893   -0.0395 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8533   -1.6289   -0.0644 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4246   -1.3276    0.7361 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0184   -0.5679    1.8408 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2631   -0.4349   -0.1237 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3172   -0.8488   -1.5571 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9897   -2.0001    2.0958 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0234   -2.8520    0.4332 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4899   -2.5425    1.3258 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0069   -1.0261   -0.6103 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7023   -0.3111    2.3043 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7033   -1.1180    1.1109 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5245    0.9591    1.5615 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1012    1.9009    1.2297 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6156    3.1042   -0.3265 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3025    0.2685    1.5439 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4698    1.1721   -1.1098 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9808    2.2275    0.3359 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4484    1.4853   -1.9731 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1807    2.8187   -0.8510 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4886    1.2542    0.9409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0293    0.8190   -1.6993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1589    1.5387    1.3880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5842    2.7822    0.1897 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6834    1.3150   -1.6229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6024    1.6894   -0.1677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6699    0.1821   -1.1723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4020   -0.6248    0.8668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5656    1.7183    1.8512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6065   -0.7657    1.9538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8506   -2.0081    1.7398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3491   -2.5366   -0.0714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7405   -1.6742   -0.7563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1012   -1.6487   -2.3526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8636   -1.2323   -2.5370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6528    0.0410   -2.7648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8859   -0.1568    1.0433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3497   -2.4581    0.4769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5700   -1.9900   -1.0487 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8283   -2.2790    1.0289 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1981   -1.0675    2.6607 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4386   -0.5181   -2.1496 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2121   -0.4196   -2.0663 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3625   -1.9518   -1.7000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  2  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  6
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  6
 28  8  1  0
 28 11  1  0
 24 12  1  0
 22 16  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  2 33  1  6
  3 34  1  0
  3 35  1  0
  4 36  1  0
  4 37  1  0
  7 38  1  0
  8 39  1  1
  9 40  1  0
  9 41  1  0
 10 42  1  0
 10 43  1  0
 11 44  1  1
 12 45  1  6
 15 46  1  0
 15 47  1  0
 16 48  1  6
 17 49  1  0
 17 50  1  0
 18 51  1  6
 19 52  1  0
 20 53  1  0
 20 54  1  0
 21 55  1  0
 21 56  1  0
 23 57  1  0
 23 58  1  0
 23 59  1  0
 24 60  1  1
 25 61  1  0
 25 62  1  0
 26 63  1  1
 27 64  1  0
 29 65  1  0
 29 66  1  0
 29 67  1  0
M  END

Synonyms

Value	Source
(3alpha,5beta,12alpha)-3,12-Dihydroxy-7-oxocholan-24-Oic acid	ChEBI
3alpha,12alpha-Dihydroxy-7-keto-5beta-cholanoic acid	ChEBI
3alpha,12alpha-Dihydroxy-7-oxo-5beta-cholanate	ChEBI
3alpha,12alpha-Diol-7-one-5beta-cholanoic acid	ChEBI
7-Oxodeoxycholic acid	ChEBI
(3a,5b,12a)-3,12-Dihydroxy-7-oxocholan-24-Oate	Generator
(3a,5b,12a)-3,12-Dihydroxy-7-oxocholan-24-Oic acid	Generator
(3alpha,5beta,12alpha)-3,12-Dihydroxy-7-oxocholan-24-Oate	Generator
(3Α,5β,12α)-3,12-dihydroxy-7-oxocholan-24-Oate	Generator
(3Α,5β,12α)-3,12-dihydroxy-7-oxocholan-24-Oic acid	Generator
3a,12a-Dihydroxy-7-keto-5b-cholanoate	Generator
3a,12a-Dihydroxy-7-keto-5b-cholanoic acid	Generator
3alpha,12alpha-Dihydroxy-7-keto-5beta-cholanoate	Generator
3Α,12α-dihydroxy-7-keto-5β-cholanoate	Generator
3Α,12α-dihydroxy-7-keto-5β-cholanoic acid	Generator
3a,12a-Dihydroxy-7-oxo-5b-cholanate	Generator
3a,12a-Dihydroxy-7-oxo-5b-cholanic acid	Generator
3alpha,12alpha-Dihydroxy-7-oxo-5beta-cholanic acid	Generator
3Α,12α-dihydroxy-7-oxo-5β-cholanate	Generator
3Α,12α-dihydroxy-7-oxo-5β-cholanic acid	Generator
3a,12a-Diol-7-one-5b-cholanoate	Generator
3a,12a-Diol-7-one-5b-cholanoic acid	Generator
3alpha,12alpha-Diol-7-one-5beta-cholanoate	Generator
3Α,12α-diol-7-one-5β-cholanoate	Generator
3Α,12α-diol-7-one-5β-cholanoic acid	Generator
7-Oxodeoxycholate	Generator
7-Ketodeoxycholate	Generator
(3a,5b,12a)-3,12-Dihydroxy-7-oxo-cholan-24-Oate	HMDB
(3a,5b,12a)-3,12-Dihydroxy-7-oxo-cholan-24-Oic acid	HMDB
3 alpha,12 alpha-Diol-7-one-5 beta-cholanoate	HMDB
3 alpha,12 alpha-Diol-7-one-5 beta-cholanoic acid	HMDB
3 alpha,7 alpha-Dihydroxy-7-keto-5 beta-cholanoate	HMDB
3 alpha,7 alpha-Dihydroxy-7-keto-5 beta-cholanoic acid	HMDB
3a,12a-Dihydroxy-7-oxo-5b-cholan-24-Oate	HMDB
3a,12a-Dihydroxy-7-oxo-5b-cholan-24-Oic acid	HMDB
7-Ketodeoxycholic acid, (3alpha,12alpha)-isomer	HMDB
(4R)-4-[(1S,2S,5R,7S,10R,11S,14R,15R,16S)-5,16-Dihydroxy-2,15-dimethyl-9-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl]pentanoate	HMDB
7-Ketodeoxycholic acid	ChEBI

Molecular Formula

C₂₄H₃₈O₅

Average Mass

406.5555

Monoisotopic Mass

406.271924326

IUPAC Name

(4R)-4-[(1S,2S,5R,7S,10R,11S,14R,15R,16S)-5,16-dihydroxy-2,15-dimethyl-9-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl]pentanoic acid

Traditional Name

7-ketodeoxycholic acid

CAS Registry Number

911-40-0

SMILES

[H][C@@]12CC[C@H]([C@H](C)CCC(O)=O)[C@@]1(C)[C@@H](O)C[C@@]1([H])[C@@]2([H])C(=O)C[C@]2([H])C[C@H](O)CC[C@]12C

InChI Identifier

InChI=1S/C24H38O5/c1-13(4-7-21(28)29)16-5-6-17-22-18(12-20(27)24(16,17)3)23(2)9-8-15(25)10-14(23)11-19(22)26/h13-18,20,22,25,27H,4-12H2,1-3H3,(H,28,29)/t13-,14+,15-,16-,17+,18+,20+,22+,23+,24-/m1/s1

InChI Key

RHCPKKNRWFXMAT-RRWYKFPJSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dihydroxy bile acids, alcohols and derivatives. Dihydroxy bile acids, alcohols and derivatives are compounds containing or derived from a bile acid or alcohol, and which bears exactly two carboxylic acid groups.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Bile acids, alcohols and derivatives

Direct Parent

Dihydroxy bile acids, alcohols and derivatives

Alternative Parents

Substituents

Dihydroxy bile acid, alcohol, or derivatives
3-hydroxysteroid
7-oxosteroid
3-alpha-hydroxysteroid
12-hydroxysteroid
Oxosteroid
Hydroxysteroid
Cyclic alcohol
Secondary alcohol
Ketone
Carboxylic acid
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Organooxygen compound
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

7-oxo steroid (CHEBI:16390 )
oxo-5beta-cholanic acid (CHEBI:16390 )
C24 bile acids, alcohols, and derivatives (LMST04010184 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.041 g/L	ALOGPS
logP	2.61	ALOGPS
logP	2.87	ChemAxon
logS	-4	ALOGPS
pKa (Strongest Acidic)	4.44	ChemAxon
pKa (Strongest Basic)	-0.33	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	94.83 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	109.86 m³·mol⁻¹	ChemAxon
Polarizability	46.22 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Biological Properties

Cellular Locations

Extracellular

Biospecimen Locations

Feces
Gall Bladder
Intestine
Kidney
Liver

Tissue Locations

Gall Bladder
Intestine
Kidney
Liver

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0192108	Solute carrier organic anion transporter family member 1B3	Transporter	Q9NPD5	Homo_sapiens
MMDBp0192115	Solute carrier organic anion transporter family member 1B1	Transporter	Q9Y6L6	Homo_sapiens
MMDBp0193395	Canalicular multispecific organic anion transporter 2	Transporter	O15438	Homo_sapiens
MMDBp0193400	Bile salt export pump	Transporter	O95342	Homo_sapiens
MMDBp0193547	Ileal sodium/bile acid cotransporter	Transporter	Q12908	Homo_sapiens
MMDBp0193577	Sodium/bile acid cotransporter	Transporter	Q14973	Homo_sapiens
MMDBp0193639	Solute carrier organic anion transporter family member 1A2	Transporter	P46721	Homo_sapiens
MMDBp0193865	Solute carrier organic anion transporter family member 4A1	Transporter	Q96BD0	Homo_sapiens
MMDBp0195864	Gastrotropin	Unknown	P51161	Homo_sapiens

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1	Human ; Human feces; Human feces; pleural fluid plaque; bal	Microbial culture
Bacteria	Bacteroidetes	1		Microbial culture
Bacteria	Firmicutes	1		Indirect association between microbiota composition and metabolites measured in host biospecimen

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Age	Sex	Health Condition	Data Source	Reference
Human Gall Bladder	Detected but not Quantified	Not Specified	Not Specified	Normal	HMDB	34986597
Human Intestine	Detected but not Quantified	Not Specified	Not Specified	Normal	HMDB	34986597
Human Kidney	Detected but not Quantified	Not Specified	Not Specified	Normal	HMDB	34986597
Human Liver	Detected but not Quantified	Not Specified	Not Specified	Normal	HMDB	34986597
Human Feces	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	27543620
Human Feces	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	25037050
Human Feces	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	29808030

External Links

HMDB ID

HMDB0000391

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB022009

KNApSAcK ID

Not Available

Chemspider ID

163659

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

5380

PubChem Compound

188292

PDB ID

Not Available

ChEBI ID

16390

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Kihira K, Shimazu K, Kuwabara M, Yoshii M, Takeuchi H, Nakano I, Ozawa S, Onuki M, Hatta Y, Hoshita T: Bile acid profiles in bile, urine, and feces of a patient with cerebrotendinous xanthomatosis. Steroids. 1986 Jul-Aug;48(1-2):109-19. doi: 10.1016/0039-128x(86)90045-0. [PubMed:3660436 ]
Kuramoto T, Furukawa Y, Nishina T, Sugimoto T, Mahara R, Tohma M, Kihira K, Hoshita T: Identification of short side chain bile acids in urine of patients with cerebrotendinous xanthomatosis. J Lipid Res. 1990 Oct;31(10):1895-902. [PubMed:2079611 ]
St-Pierre MV, Kullak-Ublick GA, Hagenbuch B, Meier PJ: Transport of bile acids in hepatic and non-hepatic tissues. J Exp Biol. 2001 May;204(Pt 10):1673-86. doi: 10.1242/jeb.204.10.1673. [PubMed:11316487 ]
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Showing metabocard for 7-Ketodeoxycholic acid (MMDBc0000100)

MOL for #<Metabolite:0x00007f12406801d8>

3D MOL for #<Metabolite:0x00007f12406801d8>

3D SDF for #<Metabolite:0x00007f12406801d8>

3D-SDF for #<Metabolite:0x00007f12406801d8>

PDB for #<Metabolite:0x00007f12406801d8>

3D PDB for #<Metabolite:0x00007f12406801d8>

SMILES for #<Metabolite:0x00007f12406801d8>

INCHI for #<Metabolite:0x00007f12406801d8>

Structure for #<Metabolite:0x00007f12406801d8>

3D Structure for #<Metabolite:0x00007f12406801d8>