| MMDBm0000007 | Acinetobacter pittii ANC 4052 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000008 | Acinetobacter radioresistens NIPH 2130 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000010 | Aeromonas jandaei Riv2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000011 | Aggregatibacter aphrophilus NJ8700 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000012 | Agrobacterium tumefaciens F2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000016 | Alcaligenes faecalis subsp. faecalis NBRC 13111 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000023 | Arcobacter butzleri RM4018 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000095 | Bradyrhizobium elkanii USDA 76 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000100 | Campylobacter fetus subsp. fetus 82-40 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000105 | Citrobacter freundii ATCC 8090 = MTCC 1658 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000159 | Escherichia | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Not Available | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000169 | Escherichia coli UTI89 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000219 | Methylobacterium nodulans | Not Available | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000222 | Ochrobactrum intermedium LMG 3301 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000288 | Vibrio mimicus MB-451 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000306 | Pelobacter carbinolicus | Not Available | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000327 | Paracoccus denitrificans | Not Available | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000333 | Pseudomonas mendocina | Not Available | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000334 | Pseudomonas putida | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000337 | Ralstonia pickettii | Not Available | Proteobacteria | Human Feces | Microbial culture | Not Available |
| MMDBm0000337 | Ralstonia pickettii | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000348 | Methylosinus trichosporium | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
