| MMDBm0000028 | Bacillus halodurans C-125 | Not Available | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000033 | Bacillus vallismortis DV1-F-3 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000187 | Gemella sanguinis ATCC700632 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000433 | Streptococcus mutans | Not Available | Firmicutes | Human | Microbial culture | Not Available |
| MMDBm0000619 | Thermoanaerobacterium saccharolyticum | Not Available | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000626 | Thermoanaerobacterium xylanolyticum | Not Available | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000633 | Staphylococcus capitis | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000692 | Staphylococcus lentus | Not Available | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000707 | Staphylococcus pasteuri | Not Available | Firmicutes | Human | Microbial culture | Not Available |
| MMDBm0000815 | Enterococcus villorum | Not Available | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000848 | Enterococcus haemoperoxidus | Not Available | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0001104 | Eubacterium hallii | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001146 | Clostridiales bacterium 1_7_47FAA | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001155 | Lachnospiraceae bacterium 5_1_57FAA | Not Available | Firmicutes | Not Available | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Not Available | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0002562 | Staphylococcus epidermidis ATCC 12228 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0002564 | Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0002566 | Staphylococcus aureus subsp. aureus USA300FPR3757 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0002610 | Streptococcus pneumoniae G54 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0002630 | Streptococcus oralis Uo5 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0002633 | Streptococcus pseudopneumoniae IS7493 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0767930 | Paenibacillus graminis | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0767931 | Paenibacillus graminis RSA19 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0772876 | Kurthia massiliensis | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0774772 | Staphylococcus arlettae CVD059 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
