| MMDBm0000012 | Agrobacterium tumefaciens F2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000105 | Citrobacter freundii ATCC 8090 = MTCC 1658 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Not Available | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000162 | Escherichia coli CFT073 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000169 | Escherichia coli UTI89 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000222 | Ochrobactrum intermedium LMG 3301 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000288 | Vibrio mimicus MB-451 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000368 | Shigella flexneri | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001067 | Klebsiella variicola | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001191 | Actinobacillus pleuropneumoniae serovar 5b str. L20 | Not Available | Proteobacteria | Pig | Metabolic reconstruction | VMH |
| MMDBm0001192 | Actinobacillus succinogenes 130Z | Not Available | Proteobacteria | Cattle | Not Available | RHEA |
| MMDBm0001284 | Mannheimia succiniciproducens MBEL55E | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001312 | Brucella melitensis bv. 1 str. 16M | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001313 | Brucella suis 1330 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001317 | Brucella canis ATCC 23365 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001318 | Brucella suis ATCC 23445 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001409 | Caulobacter crescentus CB15 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001411 | Caulobacter crescentus NA1000 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001418 | Cellvibrio japonicus Ueda107 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001450 | Citrobacter koseri ATCC BAA-895 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001501 | Cronobacter sakazakii ATCC BAA-894 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001565 | Edwardsiella ictaluri 93-146 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
