Showing metabocard for Levulinic acid (MMDBc0000537)

Record Information
Version1.0
StatusDetected and Quantified
Creation Date2020-12-10 18:40:00 UTC
Update Date2022-08-31 06:08:17 UTC
MiMeDB IDMMDBc0000537
Metabolite Identification
Common NameLevulinic acid
DescriptionLevulinic acid is a crystalline keto acid prepared from levulose, inulin, starch, etc., by boiling them with dilute hydrochloric or sulfuric acids.
Structure
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for #<Metabolite:0x00007f092004a080>


  Mrv1652305271900192D          

  8  7  0  0  0  0            999 V2000
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.9520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
M  END
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3D MOL for #<Metabolite:0x00007f092004a080>

HMDB0000720
     RDKit          3D
Levulinic acid
 16 15  0  0  0  0  0  0  0  0999 V2000
   -2.4782    0.6087    0.5722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1102    0.0894    0.8219 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7479   -0.0612    1.9636 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2365   -0.2264   -0.3238 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1129   -0.7407    0.0935 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8609    0.2314    0.9207 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4431    1.3633    1.2526 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1179   -0.1542    1.3538 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7495    1.3864    1.3179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5838    1.0844   -0.4222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2483   -0.1877    0.6616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1194    0.7048   -0.9161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7056   -1.0247   -0.9475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9796   -1.6545    0.7222 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6700   -1.0570   -0.8114 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7952   -0.3621    0.6187 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  1  9  1  0
  1 10  1  0
  1 11  1  0
  4 12  1  0
  4 13  1  0
  5 14  1  0
  5 15  1  0
  8 16  1  0
M  END
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3D SDF for #<Metabolite:0x00007f092004a080>


  Mrv1652305271900192D          

  8  7  0  0  0  0            999 V2000
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.9520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0000537

> <DATABASE_NAME>
MIME

> <SMILES>
CC(=O)CCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C5H8O3/c1-4(6)2-3-5(7)8/h2-3H2,1H3,(H,7,8)

> <INCHI_KEY>
JOOXCMJARBKPKM-UHFFFAOYSA-N

> <FORMULA>
C5H8O3

> <MOLECULAR_WEIGHT>
116.1152

> <EXACT_MASS>
116.047344122

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
16

> <JCHEM_AVERAGE_POLARIZABILITY>
11.226704374068705

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4-oxopentanoic acid

> <ALOGPS_LOGP>
-0.14

> <JCHEM_LOGP>
-0.06885744466666677

> <ALOGPS_LOGS>
0.08

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
19.60659045342587

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.321649025460527

> <JCHEM_PKA_STRONGEST_BASIC>
-7.2827110371620964

> <JCHEM_POLAR_SURFACE_AREA>
54.37

> <JCHEM_REFRACTIVITY>
27.0881

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.39e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
levulinic acid

> <JCHEM_VEBER_RULE>
0

$$$$
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3D-SDF for #<Metabolite:0x00007f092004a080>

HMDB0000720
     RDKit          3D
Levulinic acid
 16 15  0  0  0  0  0  0  0  0999 V2000
   -2.4782    0.6087    0.5722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1102    0.0894    0.8219 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7479   -0.0612    1.9636 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2365   -0.2264   -0.3238 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1129   -0.7407    0.0935 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8609    0.2314    0.9207 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4431    1.3633    1.2526 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1179   -0.1542    1.3538 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7495    1.3864    1.3179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5838    1.0844   -0.4222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2483   -0.1877    0.6616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1194    0.7048   -0.9161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7056   -1.0247   -0.9475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9796   -1.6545    0.7222 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6700   -1.0570   -0.8114 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7952   -0.3621    0.6187 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  1  9  1  0
  1 10  1  0
  1 11  1  0
  4 12  1  0
  4 13  1  0
  5 14  1  0
  5 15  1  0
  8 16  1  0
M  END
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PDB for #<Metabolite:0x00007f092004a080>

HEADER    PROTEIN                                 27-MAY-19   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-MAY-19         0                                  
HETATM    1  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       0.976   3.644   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.977   1.334   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       6.311   2.104   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       4.977  -0.206   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6                                                            
MASTER        0    0    0    0    0    0    0    0    8    0   14    0
END
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3D PDB for #<Metabolite:0x00007f092004a080>

COMPND    HMDB0000720
HETATM    1  C1  UNL     1      -2.478   0.609   0.572  1.00  0.00           C  
HETATM    2  C2  UNL     1      -1.110   0.089   0.822  1.00  0.00           C  
HETATM    3  O1  UNL     1      -0.748  -0.061   1.964  1.00  0.00           O  
HETATM    4  C3  UNL     1      -0.237  -0.226  -0.324  1.00  0.00           C  
HETATM    5  C4  UNL     1       1.113  -0.741   0.093  1.00  0.00           C  
HETATM    6  C5  UNL     1       1.861   0.231   0.921  1.00  0.00           C  
HETATM    7  O2  UNL     1       1.443   1.363   1.253  1.00  0.00           O  
HETATM    8  O3  UNL     1       3.118  -0.154   1.354  1.00  0.00           O  
HETATM    9  H1  UNL     1      -2.750   1.386   1.318  1.00  0.00           H  
HETATM   10  H2  UNL     1      -2.584   1.084  -0.422  1.00  0.00           H  
HETATM   11  H3  UNL     1      -3.248  -0.188   0.662  1.00  0.00           H  
HETATM   12  H4  UNL     1      -0.119   0.705  -0.916  1.00  0.00           H  
HETATM   13  H5  UNL     1      -0.706  -1.025  -0.947  1.00  0.00           H  
HETATM   14  H6  UNL     1       0.980  -1.655   0.722  1.00  0.00           H  
HETATM   15  H7  UNL     1       1.670  -1.057  -0.811  1.00  0.00           H  
HETATM   16  H8  UNL     1       3.795  -0.362   0.619  1.00  0.00           H  
CONECT    1    2    9   10   11
CONECT    2    3    3    4
CONECT    4    5   12   13
CONECT    5    6   14   15
CONECT    6    7    7    8
CONECT    8   16
END
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SMILES for #<Metabolite:0x00007f092004a080>

CC(=O)CCC(O)=O
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INCHI for #<Metabolite:0x00007f092004a080>

InChI=1S/C5H8O3/c1-4(6)2-3-5(7)8/h2-3H2,1H3,(H,7,8)
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Synonyms
ValueSource
3-Acetylpropionic acidChEBI
3-Ketobutane-1-carboxylic acidChEBI
4-Ketovaleric acidChEBI
4-Oxovaleric acidChEBI
beta-Acetylpropionic acidChEBI
gamma-Ketovaleric acidChEBI
LAEVULINIC ACIDChEBI
LaevulinsaeureChEBI
LEVAChEBI
Levulic acidChEBI
LevulinsaeureChEBI
3-AcetylpropionateGenerator
3-Ketobutane-1-carboxylateGenerator
4-KetovalerateGenerator
4-OxovalerateGenerator
b-AcetylpropionateGenerator
b-Acetylpropionic acidGenerator
beta-AcetylpropionateGenerator
Β-acetylpropionateGenerator
Β-acetylpropionic acidGenerator
g-KetovalerateGenerator
g-Ketovaleric acidGenerator
gamma-KetovalerateGenerator
Γ-ketovalerateGenerator
Γ-ketovaleric acidGenerator
LAEVULINateGenerator
LevulateGenerator
LevulinateGenerator
4-OxopentanoateHMDB
4-Oxopentanoic acidHMDB
DiasporalHMDB
Levulinic acid, sodium saltHMDB
Magnesium diasporalHMDB
Calcium levulateHMDB
Magnesium levulinateHMDB
Calcium levulinateHMDB
Levulinic acid, ammonium saltHMDB
Levulinic acid, calcium saltHMDB
Magnesium laevulinateHMDB
Levulinic acidChEBI
Chemical FormulaC5H8O3
Average Molecular Weight116.1152
Monoisotopic Molecular Weight116.047344122
IUPAC Name4-oxopentanoic acid
Traditional Namelevulinic acid
CAS Registry NumberNot Available
SMILES
CC(=O)CCC(O)=O
InChI Identifier
InChI=1S/C5H8O3/c1-4(6)2-3-5(7)8/h2-3H2,1H3,(H,7,8)
InChI KeyJOOXCMJARBKPKM-UHFFFAOYSA-N