| MMDBm0000012 | Agrobacterium tumefaciens F2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000095 | Bradyrhizobium elkanii USDA 76 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000100 | Campylobacter fetus subsp. fetus 82-40 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000105 | Citrobacter freundii ATCC 8090 = MTCC 1658 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000159 | Escherichia | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000162 | Escherichia coli CFT073 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000169 | Escherichia coli UTI89 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000222 | Ochrobactrum intermedium LMG 3301 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000332 | Pseudomonas fluorescens | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000337 | Ralstonia pickettii | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000339 | Xanthomonas campestris | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000340 | Azotobacter vinelandii | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000372 | Vibrio cholerae | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000374 | Aggregatibacter actinomycetemcomitans | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001066 | Klebsiella pneumoniae | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001067 | Klebsiella variicola | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001144 | Burkholderiales bacterium 1_1_47 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001166 | Achromobacter xylosoxidans A8 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001198 | Aeromonas hydrophila subsp. hydrophila ATCC 7966 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001200 | Agrobacterium tumefaciens str. C58 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001368 | Campylobacter jejuni subsp. jejuni 81-176 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
