| MMDBm0000003 | Acidaminococcus fermentans DSM 20731 | Not Available | Firmicutes | Pig | Metabolic reconstruction | VMH |
| MMDBm0000021 | Anaerostipes caccae | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000024 | Bacillus altitudinis 41KF2b | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000025 | Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000026 | Bacillus cereus AH187 (F4810/72) | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000028 | Bacillus halodurans C-125 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000030 | Bacillus pseudofirmus OF4 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000033 | Bacillus vallismortis DV1-F-3 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000096 | Brevibacillus borstelensis AK1 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000112 | Clostridioides difficile R20291 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000125 | Clostridium clostridioforme CM201 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000136 | Clostridium saccharoperbutylacetonicum N1-4(HMT) | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000157 | Enterococcus hirae ATCC 9790 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000207 | Lactobacillus reuteri | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000262 | Ruminococcus bicirculans | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000464 | Bacillus mycoides | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000767 | Bacillus pseudofirmus | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000793 | Clostridium hiranonis | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001035 | Bacillus cereus | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
