MiMeDB: Showing metabocard for 1-Deoxy-D-xylulose (MMDBc0029609)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:34:24 UTC

Update Date

2022-08-31 13:59:29 UTC

Metabolite ID

MMDBc0029609

Metabolite Identification

Common Name

1-Deoxy-D-xylulose

Description

1-deoxy-D-xylulose 5-phosphate serves as a precursor for the biosynthesis of the vitamins thiamine and pyridoxal and for the formation of isopentenyl pyrophosphate and dimethylallyl pyrophosphate via the nonmevalonate pathway of terpenoid biosynthesis. Escherichia coli incorporates unphosphorylated 1-deoxy-D-xylulose into the terpenoid side chain of ubiquinones with high efficacy. D-xylulokinase (EC 2.7.1.17) catalyzes the phosphorylation of 1-deoxy-D-xylulose

Structure

MOL SDF PDB SMILES InChI

Synonyms

Not Available

Molecular Formula

C₅H₁₀O₄

Average Mass

134.1305

Monoisotopic Mass

134.057908808

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

60299-43-6

SMILES

Not Available

InChI Identifier

InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2/t3-,4+,5+/m1/s1

InChI Key

KZVAAIRBJJYZOW-WISUUJSJSA-N

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Not Available

Spectra

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Biological Properties

Cellular Locations

Cytoplasm

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1	Human ; Human feces; Human feces; pleural fluid plaque; bal	Unknown

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 1-Deoxy-D-xylulose (MMDBc0029609)

MOL for #<Metabolite:0x0000560bdebc8190>

3D MOL for #<Metabolite:0x0000560bdebc8190>

3D SDF for #<Metabolite:0x0000560bdebc8190>

3D-SDF for #<Metabolite:0x0000560bdebc8190>

PDB for #<Metabolite:0x0000560bdebc8190>

3D PDB for #<Metabolite:0x0000560bdebc8190>

SMILES for #<Metabolite:0x0000560bdebc8190>

INCHI for #<Metabolite:0x0000560bdebc8190>

Structure for #<Metabolite:0x0000560bdebc8190>

3D Structure for #<Metabolite:0x0000560bdebc8190>