| MMDBm0000006 | Acinetobacter baumannii | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000007 | Acinetobacter pittii ANC 4052 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000008 | Acinetobacter radioresistens NIPH 2130 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000010 | Aeromonas jandaei Riv2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000011 | Aggregatibacter aphrophilus NJ8700 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000012 | Agrobacterium tumefaciens F2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000016 | Alcaligenes faecalis subsp. faecalis NBRC 13111 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000023 | Arcobacter butzleri RM4018 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000095 | Bradyrhizobium elkanii USDA 76 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000100 | Campylobacter fetus subsp. fetus 82-40 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000101 | Campylobacter hominis ATCC BAA-381 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000105 | Citrobacter freundii ATCC 8090 = MTCC 1658 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000159 | Escherichia | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000162 | Escherichia coli CFT073 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000169 | Escherichia coli UTI89 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000190 | Haemophilus parainfluenzae T3T1 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000222 | Ochrobactrum intermedium LMG 3301 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000252 | Pseudomonas aeruginosa | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000253 | Pseudomonas tolaasii | Not Available | Proteobacteria | Human Feces | Not Available | RHEA |
| MMDBm0000288 | Vibrio mimicus MB-451 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000316 | Helicobacter pylori | Not Available | Proteobacteria | Human | Not Available | RHEA |
