| MMDBm0000011 | Aggregatibacter aphrophilus NJ8700 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000012 | Agrobacterium tumefaciens F2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000100 | Campylobacter fetus subsp. fetus 82-40 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Not Available | Proteobacteria | Human | Unknown | ECMDB |
| MMDBm0001066 | Klebsiella pneumoniae | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001144 | Burkholderiales bacterium 1_1_47 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001191 | Actinobacillus pleuropneumoniae serovar 5b str. L20 | Not Available | Proteobacteria | Pig | Metabolic reconstruction | VMH |
| MMDBm0001367 | Campylobacter jejuni subsp. jejuni NCTC 11168 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001450 | Citrobacter koseri ATCC BAA-895 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001583 | Escherichia coli str. K-12 substr. MG1655 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0002086 | Pseudomonas stutzeri DSM 4166 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002282 | Campylobacter jejuni subsp. jejuni M1 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002492 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0417443 | Brevundimonas bacteroides DSM 4726 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0453897 | Paracoccus yeei ATCC BAA-599 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0501221 | Parasutterella excrementihominis YIT 11859 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0514117 | Campylobacter jejuni subsp. jejuni ICDCCJ07004 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0514234 | Campylobacter upsaliensis JV21 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0515057 | Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0515086 | Helicobacter pullorum MIT 98-5489 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0519667 | Anaerobiospirillum succiniciproducens | Not Available | Proteobacteria | Not Available | Metabolic reconstruction | VMH |
| MMDBm0540122 | Escherichia albertii TW07627 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0544444 | Klebsiella michiganensis KCTC 1686 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0547370 | Raoultella planticola ATCC 33531 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0557387 | Tatumella ptyseos ATCC 33301 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
