MiMeDB: Showing metabocard for Tetrahydrodipicolinate (MMDBc0029933)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:47:22 UTC

Update Date

2022-08-31 17:37:42 UTC

MiMeDB ID

MMDBc0029933

Metabolite Identification

Common Name

Tetrahydrodipicolinate

Description

Tetrahydrodipicolinate is involved in amino-acid biosynthesis, specifically L-lysine biosynthesis via the DAP pathway

Structure

MOL SDF PDB SMILES InChI

Synonyms

Not Available

Chemical Formula

C₇H₉NO₄

Average Molecular Weight

171.1507

Monoisotopic Molecular Weight

171.053157781

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

2353-17-5

SMILES

Not Available

InChI Identifier

InChI=1S/C7H9NO4/c9-6(10)4-2-1-3-5(8-4)7(11)12/h4H,1-3H2,(H,9,10)(H,11,12)

InChI Key

CXMBCXQHOXUCEO-UHFFFAOYSA-N

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Not Available

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Proteins

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Related Health Condition	Evidence Type	Measured in Matrix	Data Source	Reference

Microbial Sources

Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
	Proteobacteria	1	Human	Unknown

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference	Details

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

Not Available

References

Synthesis Reference

Not Available

General References

van der Werf MJ, Overkamp KM, Muilwijk B, Coulier L, Hankemeier T: Microbial metabolomics: toward a platform with full metabolome coverage. Anal Biochem. 2007 Nov 1;370(1):17-25. doi: 10.1016/j.ab.2007.07.022. Epub 2007 Aug 1. [PubMed:17765195 ]
Keseler IM, Collado-Vides J, Santos-Zavaleta A, Peralta-Gil M, Gama-Castro S, Muniz-Rascado L, Bonavides-Martinez C, Paley S, Krummenacker M, Altman T, Kaipa P, Spaulding A, Pacheco J, Latendresse M, Fulcher C, Sarker M, Shearer AG, Mackie A, Paulsen I, Gunsalus RP, Karp PD: EcoCyc: a comprehensive database of Escherichia coli biology. Nucleic Acids Res. 2011 Jan;39(Database issue):D583-90. doi: 10.1093/nar/gkq1143. Epub 2010 Nov 21. [PubMed:21097882 ]
Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M: KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 2012 Jan;40(Database issue):D109-14. doi: 10.1093/nar/gkr988. Epub 2011 Nov 10. [PubMed:22080510 ]

Showing metabocard for Tetrahydrodipicolinate (MMDBc0029933)

MOL for #<Metabolite:0x000055b76dca2e50>

3D MOL for #<Metabolite:0x000055b76dca2e50>

3D SDF for #<Metabolite:0x000055b76dca2e50>

3D-SDF for #<Metabolite:0x000055b76dca2e50>

PDB for #<Metabolite:0x000055b76dca2e50>

3D PDB for #<Metabolite:0x000055b76dca2e50>

SMILES for #<Metabolite:0x000055b76dca2e50>

INCHI for #<Metabolite:0x000055b76dca2e50>

Structure for #<Metabolite:0x000055b76dca2e50>

3D Structure for #<Metabolite:0x000055b76dca2e50>