MiMeDB: Showing metabocard for 1-Nitronaphthalene-7,8-oxide (MMDBc0029964)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:48:37 UTC

Update Date

2022-08-31 17:38:03 UTC

Metabolite ID

MMDBc0029964

Metabolite Identification

Common Name

1-Nitronaphthalene-7,8-oxide

Description

1-nitronaphthalene-7,8-oxide belongs to the class of Naphthalenes. These are compounds containing a naphthalene moiety, which consists of two fused benzene rings. (inferred from compound structure)

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

Structure #1
  Mrv0541 02241206562D          

 14 16  0  0  0  0            999 V2000
    3.1339    1.1429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6422    0.4804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8061    1.8999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3309   -0.0874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5113    0.0073    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8226    0.5751    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9865    1.9946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1835    0.7643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4948    1.3321    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6753    1.4268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6587    2.7516    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8392    2.8463    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1505    3.4141    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1443    1.5214    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  2  6  1  0  0  0  0
  3  7  2  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  5  8  1  0  0  0  0
  6  9  2  0  0  0  0
  7  9  1  0  0  0  0
  7 11  1  0  0  0  0
  8 10  1  0  0  0  0
  8 14  1  0  0  0  0
  9 10  1  0  0  0  0
 10 14  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  2  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0029964

> <DATABASE_NAME>
MIME

> <SMILES>
O=N(=O)C1=CC=CC2=C1C1OC1C=C2

> <INCHI_IDENTIFIER>
InChI=1S/C10H7NO3/c12-11(13)7-3-1-2-6-4-5-8-10(14-8)9(6)7/h1-5,8,10H

> <INCHI_KEY>
JBECFHRNFSQXPM-UHFFFAOYSA-N

> <FORMULA>
C10H7NO3

> <MOLECULAR_WEIGHT>
189.1675

> <EXACT_MASS>
189.042593095

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_AVERAGE_POLARIZABILITY>
17.522366027047042

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
7-nitro-1aH,7bH-naphtho[1,2-b]oxirene

> <ALOGPS_LOGP>
1.94

> <JCHEM_LOGP>
2.0981589130000007

> <ALOGPS_LOGS>
-2.52

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.267592174633054

> <JCHEM_POLAR_SURFACE_AREA>
58.35

> <JCHEM_REFRACTIVITY>
51.1944

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.71e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-nitronaphthalene-7,8-oxide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: Structure #1                                      
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0       5.850   2.133   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.932   0.897   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.238   3.546   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.484  -0.163   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.954   0.014   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.402   1.074   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.708   3.723   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.343   1.427   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.790   2.487   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.261   2.663   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       3.096   5.136   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0       1.567   5.313   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       4.014   6.373   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -0.269   2.840   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1    6                                                       
CONECT    3    1    7                                                       
CONECT    4    5    6                                                       
CONECT    5    4    8                                                       
CONECT    6    2    4    9                                                  
CONECT    7    3    9   11                                                  
CONECT    8    5   10   14                                                  
CONECT    9    6    7   10                                                  
CONECT   10    8    9   14                                                  
CONECT   11    7   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    8   10                                                       
MASTER        0    0    0    0    0    0    0    0   14    0   32    0
END

Synonyms

Not Available

Molecular Formula

C₁₀H₇NO₃

Average Mass

189.1675

Monoisotopic Mass

189.042593095

IUPAC Name

7-nitro-1aH,7bH-naphtho[1,2-b]oxirene

Traditional Name

1-nitronaphthalene-7,8-oxide

CAS Registry Number

Not Available

SMILES

O=N(=O)C1=CC=CC2=C1C1OC1C=C2

InChI Identifier

InChI=1S/C10H7NO3/c12-11(13)7-3-1-2-6-4-5-8-10(14-8)9(6)7/h1-5,8,10H

InChI Key

JBECFHRNFSQXPM-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as nitronaphthalenes. These are polycyclic aromatic compounds containing a naphthalene moiety substituted by one or more nitro groups.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

1-nitronaphthalene
Nitroaromatic compound
C-nitro compound
Organic nitro compound
Dialkyl ether
Oxirane
Ether
Organic oxoazanium
Allyl-type 1,3-dipolar organic compound
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Organoheterocyclic compound
Oxacycle
Organic nitrogen compound
Organic oxygen compound
Organonitrogen compound
Organopnictogen compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

nitronaphthalene (CHEBI:34106 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.57 g/L	ALOGPS
logP	1.94	ALOGPS
logP	2.1	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	58.35 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	51.19 m³·mol⁻¹	ChemAxon
Polarizability	17.52 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Biological Properties

Cellular Locations

Membrane

Biospecimen Locations

Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0192428	Glutathione S-transferase Mu 2	Enzyme	P28161	Homo_sapiens
MMDBp0192431	Glutathione S-transferase Mu 1	Enzyme	P09488	Homo_sapiens
MMDBp0192433	Glutathione S-transferase kappa 1	Enzyme	Q9Y2Q3	Homo_sapiens
MMDBp0192434	Microsomal glutathione S-transferase 3	Enzyme	O14880	Homo_sapiens
MMDBp0192435	Glutathione S-transferase Mu 3	Enzyme	P21266	Homo_sapiens
MMDBp0192436	Glutathione S-transferase A1	Enzyme	P08263	Homo_sapiens
MMDBp0192438	Microsomal glutathione S-transferase 1	Enzyme	P10620	Homo_sapiens
MMDBp0192439	Glutathione S-transferase Mu 4	Enzyme	Q03013	Homo_sapiens
MMDBp0192440	Glutathione S-transferase Mu 5	Enzyme	P46439	Homo_sapiens
MMDBp0192441	Microsomal glutathione S-transferase 2	Enzyme	Q99735	Homo_sapiens
MMDBp0192442	Glutathione S-transferase omega-1	Enzyme	P78417	Homo_sapiens
MMDBp0192443	Glutathione S-transferase A5	Enzyme	Q7RTV2	Homo_sapiens
MMDBp0192444	Glutathione S-transferase A2	Enzyme	P09210	Homo_sapiens
MMDBp0192446	Glutathione S-transferase A3	Enzyme	Q16772	Homo_sapiens
MMDBp0192447	Glutathione S-transferase A4	Enzyme	O15217	Homo_sapiens
MMDBp0192451	Glutathione S-transferase omega-2	Enzyme	Q9H4Y5	Homo_sapiens
MMDBp0192452	Glutathione S-transferase theta-1	Unknown	P30711	Homo_sapiens
MMDBp0192454	Glutathione S-transferase P	Enzyme	P09211	Homo_sapiens
MMDBp0196825	Glutathione S-transferase theta-2B	Unknown	P0CG30

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1	Human ; Human feces; Human feces; pleural fluid plaque; bal	Unknown

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified									HMDB

External Links

HMDB ID

HMDB0060332

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C14802

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11954053

PDB ID

Not Available

ChEBI ID

34106

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Magrane M: UniProt Knowledgebase: a hub of integrated protein data. Database (Oxford). 2011 Mar 29;2011:bar009. doi: 10.1093/database/bar009. Print 2011. [PubMed:21447597 ]
Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Drager A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlic A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, Rose PW, Burley SK, Fleming RMT, Nielsen J, Thiele I, Palsson BO: Recon3D enables a three-dimensional view of gene variation in human metabolism. Nat Biotechnol. 2018 Mar;36(3):272-281. doi: 10.1038/nbt.4072. Epub 2018 Feb 19. [PubMed:29457794 ]

Showing metabocard for 1-Nitronaphthalene-7,8-oxide (MMDBc0029964)

MOL for #<Metabolite:0x00007f124069a880>

3D MOL for #<Metabolite:0x00007f124069a880>

3D SDF for #<Metabolite:0x00007f124069a880>

3D-SDF for #<Metabolite:0x00007f124069a880>

PDB for #<Metabolite:0x00007f124069a880>

3D PDB for #<Metabolite:0x00007f124069a880>

SMILES for #<Metabolite:0x00007f124069a880>

INCHI for #<Metabolite:0x00007f124069a880>

Structure for #<Metabolite:0x00007f124069a880>

3D Structure for #<Metabolite:0x00007f124069a880>