MiMeDB: Showing metabocard for Guanosine 3',5'-bis(diphosphate) (MMDBc0030068)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:52:42 UTC

Update Date

2022-08-31 17:39:27 UTC

Metabolite ID

MMDBc0030068

Metabolite Identification

Common Name

Guanosine 3',5'-bis(diphosphate)

Description

(p)ppGpp, guanosine pentaphosphate or tetraphosphate is an alarmone which is involved in the stringent response in bacteria, causing the inhibition of RNA synthesis when there is a shortage of amino acids present. This causes translation to decrease and the amino acids present are therefore conserved. (p)ppGpp is an effector molecule which is produced as a result of amino acid starvation within a bacterial cell.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Not Available

Molecular Formula

C₁₀H₁₇N₅O₁₇P₄

Average Mass

603.1603

Monoisotopic Mass

602.956990191

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

33503-72-9

SMILES

Not Available

InChI Identifier

InChI=1S/C10H17N5O17P4/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6(30-36(26,27)32-34(21,22)23)3(29-9)1-28-35(24,25)31-33(18,19)20/h2-3,5-6,9,16H,1H2,(H,24,25)(H,26,27)(H2,18,19,20)(H2,21,22,23)(H3,11,13,14,17)/t3-,5-,6-,9-/m1/s1

InChI Key

BUFLLCUFNHESEH-UUOKFMHZSA-N

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Not Available

Spectra

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0194931	Protein prune homolog	Unknown	Q86TP1	Homo_sapiens
MMDBp0196880	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1	Unknown	Q8N4P3

Human Pathways

Pathways

Name	SMPDB/PathBank
EGF Signalling Pathway

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	77	Human ; Human feces; Human feces; pleural fluid plaque; bal; River trout	Unknown
Bacteria/NULL	Proteobacteria	1	Human ; Human feces; Human feces; pleural fluid plaque; bal; River trout	Unknown
Bacteria	Actinobacteria	2	Human
Bacteria	Firmicutes	2	Human feces
Bacteria	Aquificae	1
Bacteria	Spirochaetes	1	Human
Bacteria	Tenericutes	3	Human
Bacteria	nah	1

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for Guanosine 3',5'-bis(diphosphate) (MMDBc0030068)

MOL for #<Metabolite:0x00007f1241949878>

3D MOL for #<Metabolite:0x00007f1241949878>

3D SDF for #<Metabolite:0x00007f1241949878>

3D-SDF for #<Metabolite:0x00007f1241949878>

PDB for #<Metabolite:0x00007f1241949878>

3D PDB for #<Metabolite:0x00007f1241949878>

SMILES for #<Metabolite:0x00007f1241949878>

INCHI for #<Metabolite:0x00007f1241949878>

Structure for #<Metabolite:0x00007f1241949878>

3D Structure for #<Metabolite:0x00007f1241949878>