MiMeDB: Showing metabocard for L-Fuculose 1-phosphate (MMDBc0030073)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:52:53 UTC

Update Date

2022-08-31 17:39:30 UTC

MiMeDB ID

MMDBc0030073

Metabolite Identification

Common Name

L-Fuculose 1-phosphate

Description

L-fuculose 1-phosphate is a member of the chemical class known as Hexoses. These are monosaccharides in which the sugar unit is a hexose. Collectively, the data suggest that L-fuculose-1-phosphate plays a role in the regulation of ribose usage as a carbon source by E. Collectively, the data suggest that L-fuculose-1-phosphate plays a role in the regulation of ribose usage as a carbon source by E. Collectively, the data suggest that L-fuculose-1-phosphate plays a role in the regulation of ribose usage as a carbon source by E. (PMID 17709419 )

Structure

MOL SDF PDB SMILES InChI


  Mrv0541 03281501362D          

 15 14  0  0  0  0            999 V2000
   -1.6741    0.0418    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9596    0.4543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2451    0.0418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4693    0.4543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1837    0.0418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8982    0.4543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6127    0.0418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6257    0.0637    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4451    0.0564    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   -2.6450    0.8711    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   -2.6482   -1.0088    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2451   -0.7831    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4693    1.2793    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1837   -0.7831    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8982    1.2793    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6 15  1  0  0  0  0
  5 14  1  0  0  0  0
  4 13  1  0  0  0  0
  3 12  2  0  0  0  0
  8 11  2  0  0  0  0
  1  2  1  0  0  0  0
  1  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
M  CHG  2   9  -1  10  -1
M  END
> <DATABASE_ID>
MMDBc0030073

> <DATABASE_NAME>
MIME

> <SMILES>
CC(O)C(O)C(O)C(=O)COP([O-])([O-])=O

> <INCHI_IDENTIFIER>
InChI=1S/C6H13O8P/c1-3(7)5(9)6(10)4(8)2-14-15(11,12)13/h3,5-7,9-10H,2H2,1H3,(H2,11,12,13)/p-2

> <INCHI_KEY>
KNYGWWDTPGSEPD-UHFFFAOYSA-L

> <FORMULA>
C6H11O8P

> <MOLECULAR_WEIGHT>
242.121

> <EXACT_MASS>
242.020251472

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
26

> <JCHEM_AVERAGE_POLARIZABILITY>
19.526780188913637

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
-2

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,4,5-trihydroxy-1-(phosphonatooxy)hexan-2-one

> <ALOGPS_LOGP>
-1.51

> <JCHEM_LOGP>
-2.3436879566666664

> <ALOGPS_LOGS>
-0.64

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.208699831029235

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.1785976312994677

> <JCHEM_PKA_STRONGEST_BASIC>
-3.054294025569079

> <JCHEM_POLAR_SURFACE_AREA>
150.17999999999998

> <JCHEM_REFRACTIVITY>
44.6476

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.35e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,4,5-trihydroxy-1-(phosphonatooxy)hexan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-MAR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-MAR-15         0                                  
HETATM    1  O   UNK     0      -3.125   0.078   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -1.791   0.848   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.458   0.078   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.876   0.848   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.210   0.078   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.543   0.848   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.877   0.078   0.000  0.00  0.00           C+0
HETATM    8  P   UNK     0      -4.901   0.119   0.000  0.00  0.00           P+0
HETATM    9  O   UNK     0      -6.431   0.105   0.000  0.00  0.00           O-1
HETATM   10  O   UNK     0      -4.937   1.626   0.000  0.00  0.00           O-1
HETATM   11  O   UNK     0      -4.943  -1.883   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -0.458  -1.462   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       0.876   2.388   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       2.210  -1.462   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       3.543   2.388   0.000  0.00  0.00           O+0
CONECT    1    2    8                                                       
CONECT    2    3    1                                                       
CONECT    3    2    4   12                                                  
CONECT    4    3    5   13                                                  
CONECT    5    4    6   14                                                  
CONECT    6    5    7   15                                                  
CONECT    7    6                                                            
CONECT    8   11    1    9   10                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8                                                            
CONECT   12    3                                                            
CONECT   13    4                                                            
CONECT   14    5                                                            
CONECT   15    6                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   28    0
END

Synonyms

Value	Source
L-Fuculose 1-phosphoric acid	Generator

Chemical Formula

C₆H₁₁O₈P

Average Molecular Weight

242.121

Monoisotopic Molecular Weight

242.020251472

IUPAC Name

3,4,5-trihydroxy-1-(phosphonatooxy)hexan-2-one

Traditional Name

3,4,5-trihydroxy-1-(phosphonatooxy)hexan-2-one

CAS Registry Number

92418-41-2

SMILES

CC(O)C(O)C(O)C(=O)COP([O-])([O-])=O

InChI Identifier

InChI=1S/C6H13O8P/c1-3(7)5(9)6(10)4(8)2-14-15(11,12)13/h3,5-7,9-10H,2H2,1H3,(H2,11,12,13)/p-2

InChI Key

KNYGWWDTPGSEPD-UHFFFAOYSA-L

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as monosaccharide phosphates. These are monosaccharides comprising a phosphated group linked to the carbohydrate unit.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Monosaccharide phosphates

Alternative Parents

Substituents

Hexose monosaccharide
Glycerone phosphate
Monosaccharide phosphate
Acyloin
Beta-hydroxy ketone
Alkyl phosphate
Organic phosphoric acid derivative
Phosphoric acid ester
Alpha-hydroxy ketone
Secondary alcohol
Ketone
1,2-diol
Polyol
Carbonyl group
Hydrocarbon derivative
Alcohol
Organic oxide
Organic anion
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

a hexose-1-phosphate (RHAMNULOSE-1P )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	63.5 g/L	ALOGPS
logP	-1.5	ALOGPS
logP	-2.3	ChemAxon
logS	-0.64	ALOGPS
pKa (Strongest Acidic)	1.18	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	150.18 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	44.65 m³·mol⁻¹	ChemAxon
Polarizability	19.53 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Deposition Date
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Proteins

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Related Health Condition	Evidence Type	Measured in Matrix	Data Source	Reference

Microbial Sources

Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
	Proteobacteria	72	Pig ; Human Feces; Human	Unknown; Metabolic reconstruction;
	Firmicutes	40	Human Feces; Human	Metabolic reconstruction
	Actinobacteria	12	Human Feces; Human	Metabolic reconstruction
	Verrucomicrobia	1	Human	Metabolic reconstruction
	Bacteroidetes	50	Human Feces; Human	Metabolic reconstruction
	Spirochaetes	1	Human Feces	Metabolic reconstruction
	Fusobacteria	1	Human Feces	Metabolic reconstruction
	Planctomycetes	1	Human Feces	Metabolic reconstruction
	Euryarchaeota	1	Cattle	Metabolic reconstruction
Archaea	Euryarchaeota	6

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference	Details

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified									HMDB		details

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

19811131

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Noronha A, Modamio J, Jarosz Y, Guerard E, Sompairac N, Preciat G, Danielsdottir AD, Krecke M, Merten D, Haraldsdottir HS, Heinken A, Heirendt L, Magnusdottir S, Ravcheev DA, Sahoo S, Gawron P, Friscioni L, Garcia B, Prendergast M, Puente A, Rodrigues M, Roy A, Rouquaya M, Wiltgen L, Zagare A, John E, Krueger M, Kuperstein I, Zinovyev A, Schneider R, Fleming RMT, Thiele I: The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 2019 Jan 8;47(D1):D614-D624. doi: 10.1093/nar/gky992. [PubMed:30371894 ]
Wishart DS, Li C, Marcu A, Badran H, Pon A, Budinski Z, Patron J, Lipton D, Cao X, Oler E, Li K, Paccoud M, Hong C, Guo AC, Chan C, Wei W, Ramirez-Gaona M: PathBank: a comprehensive pathway database for model organisms. Nucleic Acids Res. 2020 Jan 8;48(D1):D470-D478. doi: 10.1093/nar/gkz861. [PubMed:31602464 ]
Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for L-Fuculose 1-phosphate (MMDBc0030073)

MOL for #<Metabolite:0x0000564abfc133c8>

3D MOL for #<Metabolite:0x0000564abfc133c8>

3D SDF for #<Metabolite:0x0000564abfc133c8>

3D-SDF for #<Metabolite:0x0000564abfc133c8>

PDB for #<Metabolite:0x0000564abfc133c8>

3D PDB for #<Metabolite:0x0000564abfc133c8>

SMILES for #<Metabolite:0x0000564abfc133c8>

INCHI for #<Metabolite:0x0000564abfc133c8>

Structure for #<Metabolite:0x0000564abfc133c8>

3D Structure for #<Metabolite:0x0000564abfc133c8>