| MMDBm0000003 | Acidaminococcus fermentans DSM 20731 | Not Available | Firmicutes | Pig | Metabolic reconstruction | VMH |
| MMDBm0000021 | Anaerostipes caccae | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000028 | Bacillus halodurans C-125 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000092 | Blautia hansenii DSM 20583 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000093 | Blautia obeum A2-162 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000096 | Brevibacillus borstelensis AK1 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000112 | Clostridioides difficile R20291 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000120 | Clostridium botulinum A str. ATCC 19397 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000121 | Clostridium botulinum Bf | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000122 | Clostridium botulinum F str. 230613 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000143 | Coprococcus catus GD/7 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000147 | Dorea formicigenerans ATCC 27755 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000172 | Eubacterium limosum KIST612 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000226 | Paenibacillus alvei DSM 29 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000227 | Paenibacillus barengoltzii G22 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000228 | Paenibacillus daejeonensis DSM 15491 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000265 | Ruminococcus sp. SR1/5 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000277 | Streptococcus salivarius JIM8777 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000423 | Staphylococcus aureus | Not Available | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000426 | Staphylococcus haemolyticus | Not Available | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000437 | Streptococcus pyogenes | Not Available | Firmicutes | Human | Not Available | RHEA |
