| MMDBm0000160 | Escherichia coli | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000337 | Ralstonia pickettii | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001067 | Klebsiella variicola | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001144 | Burkholderiales bacterium 1_1_47 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001312 | Brucella melitensis bv. 1 str. 16M | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001313 | Brucella suis 1330 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001409 | Caulobacter crescentus CB15 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001583 | Escherichia coli str. K-12 substr. MG1655 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001584 | Escherichia coli O157:H7 str. Sakai | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001685 | Helicobacter pylori 26695 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001810 | Mesorhizobium loti MAFF303099 | Not Available | Proteobacteria | Human Feces | Not Available | RHEA |
| MMDBm0002391 | Pseudomonas aeruginosa PAO1 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002429 | Ralstonia solanacearum GMI1000 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002492 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0002538 | Sinorhizobium meliloti 1021 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0500745 | Oxalobacter formigenes HOxBLS | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0500746 | Oxalobacter formigenes OXCC13 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0501242 | Sutterella wadsworthensis 3_1_45B | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0509991 | Bilophila wadsworthia 3_1_6 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0510096 | Desulfovibrio piger ATCC 29098 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0510126 | Desulfovibrio sp. 3_1_syn3 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0513907 | Campylobacter coli JV20 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0514234 | Campylobacter upsaliensis JV21 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0515041 | Helicobacter bilis ATCC 43879 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0515057 | Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
