| MMDBm0000007 | Acinetobacter pittii ANC 4052 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000337 | Ralstonia pickettii | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001066 | Klebsiella pneumoniae | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001067 | Klebsiella variicola | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001144 | Burkholderiales bacterium 1_1_47 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001183 | Acinetobacter sp. ADP1 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001188 | Acinetobacter baumannii AB0057 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001312 | Brucella melitensis bv. 1 str. 16M | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001313 | Brucella suis 1330 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001409 | Caulobacter crescentus CB15 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001583 | Escherichia coli str. K-12 substr. MG1655 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001584 | Escherichia coli O157:H7 str. Sakai | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001685 | Helicobacter pylori 26695 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001727 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001810 | Mesorhizobium loti MAFF303099 | Not Available | Proteobacteria | Human Feces | Not Available | RHEA |
| MMDBm0001858 | Methylobacterium radiotolerans JCM 2831 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002190 | Vibrio furnissii NCTC 11218 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002391 | Pseudomonas aeruginosa PAO1 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002429 | Ralstonia solanacearum GMI1000 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002492 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0002538 | Sinorhizobium meliloti 1021 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002761 | Xanthomonas campestris pv. campestris str. ATCC 33913 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0500745 | Oxalobacter formigenes HOxBLS | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0500746 | Oxalobacter formigenes OXCC13 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
