Showing metabocard for 3-Oxoacyl-[acyl-carrier protein] (MMDBc0031936)

Record Information
Version1.0
StatusDetected and Quantified
Creation Date2021-11-18 01:55:41 UTC
Update Date2022-08-31 18:26:36 UTC
Metabolite IDMMDBc0031936
Metabolite Identification
Common Name3-Oxoacyl-[acyl-carrier protein]
DescriptionAn acyl-[acyl-carrier protein] where the acyl group is substituted at position 3 by an oxo group
Structure
MOLSDFPDBSMILESInChI

MOL for #<Metabolite:0x00007f1240c2e850>

 
  Mrv1533006041517182D          
 
 10  9  0  0  1  0            999 V2000
   10.9037   -9.3225    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.6182   -9.7350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3327   -9.3225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0471   -9.7350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7616   -9.3225    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.4761   -9.7350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1905   -9.3225    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.6182  -10.6425    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.3327   -8.4975    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.7616   -8.4975    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  8  2  0  0  0  0
  3  9  2  0  0  0  0
  5 10  1  1  0  0  0
M  END
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3D MOL for #<Metabolite:0x00007f1240c2e850>

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3D SDF for #<Metabolite:0x00007f1240c2e850>
 
  Mrv1533006041517182D          
 
 10  9  0  0  1  0            999 V2000
   10.9037   -9.3225    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.6182   -9.7350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3327   -9.3225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0471   -9.7350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7616   -9.3225    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.4761   -9.7350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1905   -9.3225    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.6182  -10.6425    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.3327   -8.4975    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.7616   -8.4975    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  8  2  0  0  0  0
  3  9  2  0  0  0  0
  5 10  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0031936

> <DATABASE_NAME>
MIME

> <SMILES>
OC[C@H](O)CC(=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C5H8O5/c6-2-3(7)1-4(8)5(9)10/h3,6-7H,1-2H2,(H,9,10)/t3-/m1/s1

> <INCHI_KEY>
UQIGQRSJIKIPKZ-GSVOUGTGSA-N

> <FORMULA>
C5H8O5

> <MOLECULAR_WEIGHT>
148.114

> <EXACT_MASS>
148.037173358

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
18

> <JCHEM_AVERAGE_POLARIZABILITY>
12.85084809843858

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(4R)-4,5-dihydroxy-2-oxopentanoic acid

> <ALOGPS_LOGP>
-1.62

> <JCHEM_LOGP>
-1.1446962983333338

> <ALOGPS_LOGS>
0.14

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.12213716943176

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.9063050280407245

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9433681969036742

> <JCHEM_POLAR_SURFACE_AREA>
94.83

> <JCHEM_REFRACTIVITY>
30.3538

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.05e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-deoxy-L-pent-2-ulosonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for #<Metabolite:0x00007f1240c2e850>
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PDB for #<Metabolite:0x00007f1240c2e850>
HEADER    PROTEIN                                 04-JUN-15   NONE
TITLE     NULL                                                        
COMPND    MOLECULE:                                                   
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUN-15         0                                  
HETATM    1  O   UNK     0      20.354 -17.402   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      21.687 -18.172   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      23.021 -17.402   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      24.355 -18.172   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      25.688 -17.402   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      27.022 -18.172   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      28.356 -17.402   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0      21.687 -19.866   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      23.021 -15.862   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      25.688 -15.862   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    8                                                  
CONECT    3    2    4    9                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   10                                                  
CONECT    6    5    7                                                       
CONECT    7    6                                                            
CONECT    8    2                                                            
CONECT    9    3                                                            
CONECT   10    5                                                            
MASTER        0    0    0    0    0    0    0    0   10    0   18    0
END

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3D PDB for #<Metabolite:0x00007f1240c2e850>
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SMILES for #<Metabolite:0x00007f1240c2e850>
OC[C@H](O)CC(=O)C(O)=O
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INCHI for #<Metabolite:0x00007f1240c2e850>
InChI=1S/C5H8O5/c6-2-3(7)1-4(8)5(9)10/h3,6-7H,1-2H2,(H,9,10)/t3-/m1/s1
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Synonyms
ValueSource
2-Dehydro-3-deoxy-L-arabinonateChEBI
2-Dehydro-3-deoxy-L-pentonateChEBI
2-Dehydro-3-deoxy-L-pentonic acidChEBI
2-Dehydro-3-deoxy-L-arabinonic acidGenerator
3-Deoxy-L-glycero-pentulosonic acidMeSH
Molecular FormulaC5H8O5
Average Mass148.114
Monoisotopic Mass148.037173358
IUPAC Name(4R)-4,5-dihydroxy-2-oxopentanoic acid
Traditional Name3-deoxy-L-pent-2-ulosonic acid
CAS Registry NumberNot Available
SMILES
OC[C@H](O)CC(=O)C(O)=O
InChI Identifier
InChI=1S/C5H8O5/c6-2-3(7)1-4(8)5(9)10/h3,6-7H,1-2H2,(H,9,10)/t3-/m1/s1
InChI KeyUQIGQRSJIKIPKZ-GSVOUGTGSA-N