MiMeDB: Showing metabocard for Ribonucleoside (MMDBc0031937)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-18 01:55:43 UTC

Update Date

2022-08-31 18:26:37 UTC

Metabolite ID

MMDBc0031937

Metabolite Identification

Common Name

Ribonucleoside

Description

Any nucleoside where the sugar component is D-ribose

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
(a3'p5')2a	ChEBI
Adenylyl-(5'->3')-adenylyl-(5'->3')-adenosine	ChEBI
Poly(a)	Kegg
Polyadenylic acid	Kegg
Polyadenylate	Generator

Molecular Formula

(C₁₀H₁₂N₅O₆P)nC₂₀H₂₅N₁₀O₁₀P

Average Mass

Not Available

Monoisotopic Mass

Not Available

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C30H37N15O16P2/c31-22-13-25(37-4-34-22)43(7-40-13)28-17(48)16(47)11(58-28)2-55-62(51,52)61-21-12(59-30(19(21)50)45-9-42-15-24(33)36-6-39-27(15)45)3-56-63(53,54)60-20-10(1-46)57-29(18(20)49)44-8-41-14-23(32)35-5-38-26(14)44/h4-12,16-21,28-30,46-50H,1-3H2,(H,51,52)(H,53,54)(H2,31,34,37)(H2,32,35,38)(H2,33,36,39)/t10-,11-,12-,16-,17-,18-,19-,20-,21-,28-,29-,30-/m1/s1

InChI Key

CUJKPTPMTCNOKC-UQTMIEBXSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligonucleotides. These are organic polymers made up of a sequence of 3 to 12 purine or pyrimidine nucleotide residues linked to one another from the 5' -end to the 3'-end through a phosphate group.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Nucleoside and nucleotide analogues

Sub Class

Oligonucleotides

Direct Parent

Oligonucleotides

Alternative Parents

Substituents

(3'->5')-oligonucleotide
Purine ribonucleoside 3',5'-bisphosphate
Purine ribonucleoside bisphosphate
Purine ribonucleoside monophosphate
Pentose phosphate
Ribonucleoside 3'-phosphate
Pentose-5-phosphate
Glycosyl compound
N-glycosyl compound
6-aminopurine
Monosaccharide phosphate
Purine
Imidazopyrimidine
Dialkyl phosphate
Aminopyrimidine
Imidolactam
Alkyl phosphate
N-substituted imidazole
Organic phosphoric acid derivative
Pyrimidine
Monosaccharide
Phosphoric acid ester
Tetrahydrofuran
Heteroaromatic compound
Imidazole
Azole
Secondary alcohol
Oxacycle
Azacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organonitrogen compound
Alcohol
Organooxygen compound
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Organic oxide
Primary alcohol
Amine
Primary amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

oligonucleotide (CHEBI:75803 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Not Available

Spectra

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1	Human ; Human feces; Human feces; pleural fluid plaque; bal	Unknown

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C00895

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Ribonucleoside

METLIN ID

Not Available

PubChem Compound

439298

PDB ID

Not Available

ChEBI ID

75803

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Sajed T, Marcu A, Ramirez M, Pon A, Guo AC, Knox C, Wilson M, Grant JR, Djoumbou Y, Wishart DS: ECMDB 2.0: A richer resource for understanding the biochemistry of E. coli. Nucleic Acids Res. 2016 Jan 4;44(D1):D495-501. doi: 10.1093/nar/gkv1060. Epub 2015 Oct 19. [PubMed:26481353 ]

Showing metabocard for Ribonucleoside (MMDBc0031937)

MOL for #<Metabolite:0x00007f1240d5db90>

3D MOL for #<Metabolite:0x00007f1240d5db90>

3D SDF for #<Metabolite:0x00007f1240d5db90>

3D-SDF for #<Metabolite:0x00007f1240d5db90>

PDB for #<Metabolite:0x00007f1240d5db90>

3D PDB for #<Metabolite:0x00007f1240d5db90>

SMILES for #<Metabolite:0x00007f1240d5db90>

INCHI for #<Metabolite:0x00007f1240d5db90>

Structure for #<Metabolite:0x00007f1240d5db90>

3D Structure for #<Metabolite:0x00007f1240d5db90>