MiMeDB: Showing metabocard for IDP (MMDBc0032840)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-18 22:01:47 UTC

Update Date

2022-08-31 21:44:15 UTC

Metabolite ID

MMDBc0032840

Metabolite Identification

Common Name

IDP

Description

IDP is an inosine nucleotide containing a pyrophosphate group esterified to the C5 of the sugar moiety.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Not Available

Molecular Formula

C₁₀H₁₄N₄O₁₁P₂

Average Mass

428.1859

Monoisotopic Mass

428.013430334

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

86-04-4

SMILES

Not Available

InChI Identifier

InChI=1S/C10H14N4O11P2/c15-6-4(1-23-27(21,22)25-26(18,19)20)24-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)17/h2-4,6-7,10,15-16H,1H2,(H,21,22)(H,11,12,17)(H2,18,19,20)/t4-,6-,7-,10?/m1/s1

InChI Key

JPXZQMKKFWMMGK-VTHZCTBJSA-N

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Not Available

Spectra

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Biological Properties

Cellular Locations

Extracellular
Mitochondria
Nucleus

Biospecimen Locations

Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0191757	Ectonucleoside triphosphate diphosphohydrolase 1	Unknown	P49961	Homo_sapiens
MMDBp0191758	Soluble calcium-activated nucleotidase 1	Unknown	Q8WVQ1	Homo_sapiens
MMDBp0191759	Ectonucleoside triphosphate diphosphohydrolase 3	Unknown	O75355	Homo_sapiens
MMDBp0191778	Uridine-cytidine kinase 1	Unknown	Q9HA47	Homo_sapiens
MMDBp0191779	Nucleoside diphosphate kinase, mitochondrial	Unknown	O00746	Homo_sapiens
MMDBp0191781	Nucleoside diphosphate kinase A	Unknown	P15531	Homo_sapiens
MMDBp0191782	Nucleoside diphosphate kinase 7	Unknown	Q9Y5B8	Homo_sapiens
MMDBp0191784	Nucleoside diphosphate kinase B	Unknown	P22392	Homo_sapiens
MMDBp0191785	Nucleoside diphosphate kinase 3	Unknown	Q13232	Homo_sapiens
MMDBp0191786	Nucleoside diphosphate kinase 6	Unknown	O75414	Homo_sapiens
MMDBp0191880	Glucokinase	Enzyme	P35557	Homo_sapiens
MMDBp0191882	Hexokinase-3	Enzyme	P52790	Homo_sapiens
MMDBp0191883	Hexokinase-2	Enzyme	P52789	Homo_sapiens
MMDBp0192369	6-phosphofructokinase type C	Unknown	Q01813	Homo_sapiens
MMDBp0192381	6-phosphofructokinase, liver type	Unknown	P17858	Homo_sapiens
MMDBp0192384	6-phosphofructokinase, muscle type	Unknown	P08237	Homo_sapiens
MMDBp0192385	Pyruvate kinase isozymes M1/M2	Unknown	P14618	Homo_sapiens
MMDBp0192387	Pyruvate kinase isozymes R/L	Unknown	P30613	Homo_sapiens
MMDBp0192495	Ectonucleoside triphosphate diphosphohydrolase 4	Unknown	Q9Y227	Homo_sapiens
MMDBp0192496	Ectonucleoside triphosphate diphosphohydrolase 6	Unknown	O75354	Homo_sapiens
MMDBp0192497	Ectonucleoside triphosphate diphosphohydrolase 5	Unknown	O75356	Homo_sapiens
MMDBp0192507	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	Unknown	P53597	Homo_sapiens
MMDBp0192508	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	Unknown	Q16822	Homo_sapiens
MMDBp0192509	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	Unknown	Q96I99	Homo_sapiens
MMDBp0192510	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	Unknown	P35558	Homo_sapiens
MMDBp0192583	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	Unknown	Q9P2R7	Homo_sapiens
MMDBp0193590	Uridine-cytidine kinase 2	Unknown	Q9BZX2	Homo_sapiens
MMDBp0193868	ENTPD4 protein	Enzyme	Q8NE73	Homo_sapiens
MMDBp0194185	Uridine-cytidine kinase-like 1	Enzyme	Q9NWZ5	Homo_sapiens
MMDBp0194442	Ectonucleoside triphosphate diphosphohydrolase 8	Unknown	Q5MY95	Homo_sapiens
MMDBp0196906	Nucleoside diphosphate kinase homolog 5	Unknown	P56597

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	235	Human ; Human feces; Human sputum; Human unknown; Pig ; Human pleural fluid plaque; Human dental plaque; Human nasal swab; Human feces; pleural fluid plaque; bal	Unknown; Metabolic reconstruction
Bacteria	Firmicutes	392	Human feces; Human pleural fluid plaque; Pig ; Human ; Cattle	Metabolic reconstruction
Bacteria	Actinobacteria	128	Human feces; Human sputum; Human bronchial brush; Human nasopharyngeal swab; Human pleural fluid plaque; Human dental plaque; Human	Metabolic reconstruction
Bacteria	Verrucomicrobia	1	Human ; Human feces	Metabolic reconstruction
Bacteria	Bacteroidetes	126	Human feces; Human appendix biopsy; Human	Metabolic reconstruction
Bacteria	Synergistetes	4	Human feces	Metabolic reconstruction
Bacteria	Spirochaetes	1	Human feces	Metabolic reconstruction
Archaea	Thaumarchaeota	1	Human feces	Metabolic reconstruction
Bacteria	Fusobacteria	20	Human feces; Human	Metabolic reconstruction
Archaea	Euryarchaeota	5	Human feces; Cattle ; Human	Metabolic reconstruction
Bacteria	Candidatus Melainabacteria	1	Human feces	Metabolic reconstruction
Bacteria	Tenericutes	4	Human feces	Metabolic reconstruction
Bacteria	Planctomycetes	1	Human feces	Metabolic reconstruction
Archaea	Crenarchaeota	1	Human feces	Metabolic reconstruction
Archaea/Archaea	Euryarchaeota	8	Human feces; Cattle ; Human	Metabolic reconstruction
Archaea/Archaea	Crenarchaeota	14	Human feces	Metabolic reconstruction
Archaea/Archaea	Korarchaeota	1
Eukaryota/Fungi	Ascomycota	1	Human feces	Unknown

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified									HMDB

External Links

Not Available

General References

Hlushko LV, Makovets'ka TI, Neiko IeM: [The dynamics of the glycocholic acid content of the bile in patients with chronic inactive hepatitis]. Lik Sprava. 1995 May-Jun;(5-6):152-4. [PubMed:8630789 ]

Showing metabocard for IDP (MMDBc0032840)

MOL for #<Metabolite:0x0000560be1d98d28>

3D MOL for #<Metabolite:0x0000560be1d98d28>

3D SDF for #<Metabolite:0x0000560be1d98d28>

3D-SDF for #<Metabolite:0x0000560be1d98d28>

PDB for #<Metabolite:0x0000560be1d98d28>

3D PDB for #<Metabolite:0x0000560be1d98d28>

SMILES for #<Metabolite:0x0000560be1d98d28>

INCHI for #<Metabolite:0x0000560be1d98d28>

Structure for #<Metabolite:0x0000560be1d98d28>

3D Structure for #<Metabolite:0x0000560be1d98d28>