MiMeDB: Showing metabocard for S-Methyl-5-thio-alpha-D-ribose 1-phosphate (MMDBc0033189)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-19 04:38:22 UTC

Update Date

2022-08-31 22:29:38 UTC

MiMeDB ID

MMDBc0033189

Metabolite Identification

Common Name

S-Methyl-5-thio-alpha-D-ribose 1-phosphate

Description

Based on a literature review very few articles have been published on (2R,3R)-N-[(5S)-5-({[(2R)-2-amino-3-selanylpropanoyl]asparagyllysylasparagyl}amino)-6-asparagyltryptophyl-6-oxohexyl]-3-methyl-3,4-dihydro-2H-pyrrole-2-carboxamide.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Not Available

Chemical Formula

C₆H₁₃O₇PS

Average Molecular Weight

260.202

Monoisotopic Molecular Weight

260.011959972

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C6H13O7PS/c1-15-2-3-4(7)5(8)6(12-3)13-14(9,10)11/h3-8H,2H2,1H3,(H2,9,10,11)/t3-,4-,5-,6-/m1/s1

InChI Key

JTFITTQBRJDSTL-KVTDHHQDSA-N

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Not Available

Spectra

Not Available

Biological Properties

Cellular Locations

Cytoplasm

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Proteins

#<MetaboliteProteinLink:0x0000564abf83aa58>

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Related Health Condition	Evidence Type	Measured in Matrix	Data Source	Reference

Microbial Sources

Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Fungi	Ascomycota	56	Human Feces	Unknown;
	Firmicutes	142	Human Feces; Pig ; Human	Metabolic reconstruction;
	Actinobacteria	22	Human Feces; Human ; Cattle	Metabolic reconstruction;
	Synergistetes	2	Human Feces	Metabolic reconstruction
	Bacteroidetes	16	Human Feces; Human	Metabolic reconstruction;
	Proteobacteria	164	Human Feces; Human ; Sheep	Metabolic reconstruction;
	Spirochaetes	8	Human Feces; Human	Metabolic reconstruction;
	Thaumarchaeota	1	Human Feces	Metabolic reconstruction
	Fusobacteria	8	Human Feces; Human	Metabolic reconstruction
	Euryarchaeota	5	Human Feces; Cattle ; Human	Metabolic reconstruction
	Candidatus Melainabacteria	1	Human Feces	Metabolic reconstruction
	Planctomycetes	2	Human Feces	Metabolic reconstruction;
	Crenarchaeota	1	Human Feces	Metabolic reconstruction
Archaea	Crenarchaeota	5
	Chloroflexi	8
Fungi	Basidiomycota	7
	Cyanobacteria	17	Human
	Acidobacteria	2
Archaea	Thaumarchaeota	2
Archaea	Euryarchaeota	10
		2
	Aquificae	3
	Deinococcus-Thermus	3
NULL		1
	Chlorobi	1
NULL	Proteobacteria	1
	Thermotogae	9
	Gemmatimonadetes	1
	Nitrospirae	1

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference	Details

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Gianotti AJ, Tower PA, Sheley JH, Conte PA, Spiro C, Ferro AJ, Fitchen JH, Riscoe MK: Selective killing of Klebsiella pneumoniae by 5-trifluoromethylthioribose. Chemotherapeutic exploitation of the enzyme 5-methylthioribose kinase. J Biol Chem. 1990 Jan 15;265(2):831-7. [PubMed:2153115 ]
Savarese TM, Cannistra AJ, Parks RE Jr, Secrist JA 3rd, Shortnacy AT, Montgomery JA: 5'-deoxy-5'-methylthioadenosine phosphorylase--IV. Biological activity of 2-fluoroadenine-substituted 5'-deoxy-5'-methylthioadenosine analogs. Biochem Pharmacol. 1987 Jun 15;36(12):1881-93. doi: 10.1016/0006-2952(87)90484-9. [PubMed:3109431 ]
Savarese TM, Ghoda LY, Dexter DL, Parks RE Jr: Conversion of 5'-deoxy-5'-methylthioadenosine and 5'-deoxy-5'-methylthioinosine to methionine in cultured human leukemic cells. Cancer Res. 1983 Oct;43(10):4699-702. [PubMed:6411330 ]
Tisdale MJ: Methionine synthesis from 5'-methylthioadenosine by tumour cells. Biochem Pharmacol. 1983 Oct 1;32(19):2915-20. doi: 10.1016/0006-2952(83)90396-9. [PubMed:6626263 ]
Ghoda LY, Savarese TM, Dexter DL, Parks RE Jr, Trackman PC, Abeles RH: Characterization of a defect in the pathway for converting 5'-deoxy-5'-methylthioadenosine to methionine in a subline of a cultured heterogeneous human colon carcinoma. J Biol Chem. 1984 Jun 10;259(11):6715-9. [PubMed:6725268 ]
Avila MA, Garcia-Trevijano ER, Lu SC, Corrales FJ, Mato JM: Methylthioadenosine. Int J Biochem Cell Biol. 2004 Nov;36(11):2125-30. doi: 10.1016/j.biocel.2003.11.016. [PubMed:15313459 ]

Showing metabocard for S-Methyl-5-thio-alpha-D-ribose 1-phosphate (MMDBc0033189)

MOL for #<Metabolite:0x0000564abee24ac8>

3D MOL for #<Metabolite:0x0000564abee24ac8>

3D SDF for #<Metabolite:0x0000564abee24ac8>

3D-SDF for #<Metabolite:0x0000564abee24ac8>

PDB for #<Metabolite:0x0000564abee24ac8>

3D PDB for #<Metabolite:0x0000564abee24ac8>

SMILES for #<Metabolite:0x0000564abee24ac8>

INCHI for #<Metabolite:0x0000564abee24ac8>

Structure for #<Metabolite:0x0000564abee24ac8>

3D Structure for #<Metabolite:0x0000564abee24ac8>