MiMeDB: Showing metabocard for Ceramide (d18:1/18:0) (MMDBc0047791)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-19 15:42:49 UTC

Update Date

2022-09-01 01:56:52 UTC

MiMeDB ID

MMDBc0047791

Metabolite Identification

Common Name

Ceramide (d18:1/18:0)

Description

Structure

MOL SDF PDB SMILES InChI

Synonyms

Not Available

Chemical Formula

C₃₆H₇₁NO₃

Average Molecular Weight

565.9538

Monoisotopic Molecular Weight

565.543395143

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C36H71NO3/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-36(40)37-34(33-38)35(39)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h29,31,34-35,38-39H,3-28,30,32-33H2,1-2H3,(H,37,40)/b31-29+/t34-,35+/m0/s1

InChI Key

VODZWWMEJITOND-NXCSZAMKSA-N

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Not Available

Spectra

Not Available

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Blood
Brain
Epidermis
Feces
Fibroblasts
Intestine
Kidney
Liver
Neuron
Pancreas
Placenta
Platelet
Skeletal Muscle
Spleen
Testis
Thyroid Gland
Urine

Tissue Locations

Brain
Epidermis
Fibroblasts
Intestine
Kidney
Liver
Neuron
Pancreas
Placenta
Platelet
Skeletal Muscle
Spleen
Testis
Thyroid Gland

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Proteins

#<MetaboliteProteinLink:0x000055b76e0a9ad0>

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Related Health Condition	Evidence Type	Measured in Matrix	Data Source	Reference

Microbial Sources

Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Fungi	Ascomycota	1	Human Feces	Unknown
	Actinobacteria	1	Human

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference	Details

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified						HMDB		details
Human	Detected and Quantified	0.008	0.001	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	0.012	0.001	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	0.022	0.001	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	0.036	0.002	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	0.040	0.002	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	0.061	0.0007	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	0.128	0.012	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	0.145	0.007	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	0.271	0.013	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	0.281	0.033	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	0.331	0.029	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	1.00	0.029	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	1.22	0.046	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human	Detected and Quantified	3.00	0.107	Adult (>18 years old)	Both	Normal	HMDB	20671299	details
Human Brain	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Epidermis	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Fibroblasts	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Intestine	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Kidney	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Liver	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Neuron	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Pancreas	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Placenta	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Platelet	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Skeletal Muscle	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Spleen	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Testis	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Thyroid Gland	Detected but not Quantified			Not Specified	Not Specified	Normal	HMDB	34986597	details
Human Urine	Detected but not Quantified			Adult (>18 years old)	Both	Normal	HMDB	32966057	details
Human Blood	Detected but not Quantified			Adult (>18 years old)	Both	Normal	HMDB	32966057	details

External Links

Not Available

References

Synthesis Reference

Not Available

General References

Bowser PA, Gray GM: Sphingomyelinase in pig and human epidermis. J Invest Dermatol. 1978 Jun;70(6):331-5. doi: 10.1111/1523-1747.ep12543516. [PubMed:25935 ]
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Holleran WM, Ginns EI, Menon GK, Grundmann JU, Fartasch M, McKinney CE, Elias PM, Sidransky E: Consequences of beta-glucocerebrosidase deficiency in epidermis. Ultrastructure and permeability barrier alterations in Gaucher disease. J Clin Invest. 1994 Apr;93(4):1756-64. doi: 10.1172/JCI117160. [PubMed:8163674 ]
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Di Marzio L, Cinque B, De Simone C, Cifone MG: Effect of the lactic acid bacterium Streptococcus thermophilus on ceramide levels in human keratinocytes in vitro and stratum corneum in vivo. J Invest Dermatol. 1999 Jul;113(1):98-106. doi: 10.1046/j.1523-1747.1999.00633.x. [PubMed:10417626 ]
Farina F, Cappello F, Todaro M, Bucchieri F, Peri G, Zummo G, Stassi G: Involvement of caspase-3 and GD3 ganglioside in ceramide-induced apoptosis in Farber disease. J Histochem Cytochem. 2000 Jan;48(1):57-62. doi: 10.1177/002215540004800106. [PubMed:10653586 ]
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Tanno O, Ota Y, Kitamura N, Katsube T, Inoue S: Nicotinamide increases biosynthesis of ceramides as well as other stratum corneum lipids to improve the epidermal permeability barrier. Br J Dermatol. 2000 Sep;143(3):524-31. doi: 10.1111/j.1365-2133.2000.03705.x. [PubMed:10971324 ]
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Lee HK, Nam GW, Kim SH, Lee SH: Phytocomponents of triterpenoids, oleanolic acid and ursolic acid, regulated differently the processing of epidermal keratinocytes via PPAR-alpha pathway. Exp Dermatol. 2006 Jan;15(1):66-73. doi: 10.1111/j.0906-6705.2005.00386.x. [PubMed:16364033 ]
Lew BL, Cho Y, Kim J, Sim WY, Kim NI: Ceramides and cell signaling molecules in psoriatic epidermis: reduced levels of ceramides, PKC-alpha, and JNK. J Korean Med Sci. 2006 Feb;21(1):95-9. doi: 10.3346/jkms.2006.21.1.95. [PubMed:16479073 ]

Showing metabocard for Ceramide (d18:1/18:0) (MMDBc0047791)

MOL for #<Metabolite:0x000055b76dfa3848>

3D MOL for #<Metabolite:0x000055b76dfa3848>

3D SDF for #<Metabolite:0x000055b76dfa3848>

3D-SDF for #<Metabolite:0x000055b76dfa3848>

PDB for #<Metabolite:0x000055b76dfa3848>

3D PDB for #<Metabolite:0x000055b76dfa3848>

SMILES for #<Metabolite:0x000055b76dfa3848>

INCHI for #<Metabolite:0x000055b76dfa3848>

Structure for #<Metabolite:0x000055b76dfa3848>

3D Structure for #<Metabolite:0x000055b76dfa3848>