| MMDBm0000010 | Aeromonas jandaei Riv2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000011 | Aggregatibacter aphrophilus NJ8700 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000012 | Agrobacterium tumefaciens F2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000105 | Citrobacter freundii ATCC 8090 = MTCC 1658 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000169 | Escherichia coli UTI89 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000190 | Haemophilus parainfluenzae T3T1 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000288 | Vibrio mimicus MB-451 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001067 | Klebsiella variicola | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001191 | Actinobacillus pleuropneumoniae serovar 5b str. L20 | Not Available | Proteobacteria | Pig | Metabolic reconstruction | VMH |
| MMDBm0001198 | Aeromonas hydrophila subsp. hydrophila ATCC 7966 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001199 | Aeromonas veronii B565 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001501 | Cronobacter sakazakii ATCC BAA-894 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001574 | Enterobacter asburiae LF7a | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001583 | Escherichia coli str. K-12 substr. MG1655 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001584 | Escherichia coli O157:H7 str. Sakai | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001593 | Escherichia coli SE11 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001810 | Mesorhizobium loti MAFF303099 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002181 | Edwardsiella tarda FL6-60 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002190 | Vibrio furnissii NCTC 11218 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002232 | Shigella flexneri 2002017 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002492 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0002531 | Shigella sonnei Ss046 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0002532 | Shigella dysenteriae Sd197 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |