| MMDBm0000012 | Agrobacterium tumefaciens F2 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000095 | Bradyrhizobium elkanii USDA 76 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000105 | Citrobacter freundii ATCC 8090 = MTCC 1658 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000162 | Escherichia coli CFT073 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000169 | Escherichia coli UTI89 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Not Available | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000222 | Ochrobactrum intermedium LMG 3301 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000288 | Vibrio mimicus MB-451 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000332 | Pseudomonas fluorescens | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000337 | Ralstonia pickettii | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000368 | Shigella flexneri | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001067 | Klebsiella variicola | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001144 | Burkholderiales bacterium 1_1_47 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001166 | Achromobacter xylosoxidans A8 | Not Available | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001200 | Agrobacterium tumefaciens str. C58 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001284 | Mannheimia succiniciproducens MBEL55E | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001312 | Brucella melitensis bv. 1 str. 16M | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001313 | Brucella suis 1330 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001317 | Brucella canis ATCC 23365 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001318 | Brucella suis ATCC 23445 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001320 | Brucella melitensis ATCC 23457 | Not Available | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001332 | Burkholderia sp. 383 | Not Available | Proteobacteria | Not Available | Not Available | RHEA |
