| MMDBm0000003 | Acidaminococcus fermentans DSM 20731 | Not Available | Firmicutes | Pig | Metabolic reconstruction | VMH |
| MMDBm0000004 | Acidaminococcus intestini RyC-MR95 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000020 | Anaerococcus prevotii DSM 20548 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000024 | Bacillus altitudinis 41KF2b | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000025 | Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000026 | Bacillus cereus AH187 (F4810/72) | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000093 | Blautia obeum A2-162 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000112 | Clostridioides difficile R20291 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000120 | Clostridium botulinum A str. ATCC 19397 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000121 | Clostridium botulinum Bf | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000122 | Clostridium botulinum F str. 230613 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000125 | Clostridium clostridioforme CM201 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000136 | Clostridium saccharoperbutylacetonicum N1-4(HMT) | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000147 | Dorea formicigenerans ATCC 27755 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000172 | Eubacterium limosum KIST612 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000181 | Faecalibacterium prausnitzii SL3/3 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000226 | Paenibacillus alvei DSM 29 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000227 | Paenibacillus barengoltzii G22 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000228 | Paenibacillus daejeonensis DSM 15491 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000287 | Veillonella parvula DSM 2008 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000464 | Bacillus mycoides | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000793 | Clostridium hiranonis | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001035 | Bacillus cereus | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
