MiMeDB: Showing metabocard for 2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoic acid (MMDBc0055208)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-17 19:46:21 UTC

Update Date

2022-08-12 20:09:16 UTC

MiMeDB ID

MMDBc0055208

Metabolite Identification

Common Name

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoic acid

Description

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon). Based on a literature review very few articles have been published on 2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652306172221462D          

 18 17  0  0  0  0            999 V2000
    1.5395    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3974    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9684    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250   -0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9684    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    1.2375    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.5408    0.8250    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.2388   -0.3020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4138    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1118    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8263    0.4125    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  1  1  0  0  0  0
  5  2  1  0  0  0  0
  6  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  3  1  0  0  0  0
  8  3  1  0  0  0  0
  9  4  1  0  0  0  0
 10  5  2  0  0  0  0
 11  6  1  0  0  0  0
 12  7  2  0  0  0  0
 13  7  1  0  0  0  0
 17  2  1  0  0  0  0
 18 14  1  0  0  0  0
 18 15  1  0  0  0  0
 18 16  2  0  0  0  0
 18 17  1  0  0  0  0
M  CHG  2  13  -1  14  -1
M  END
> <DATABASE_ID>
MMDBc0055208

> <DATABASE_NAME>
MIME

> <SMILES>
NC(CC(O)C(O)C(=O)COP(O)([O-])=O)C([O-])=O

> <INCHI_IDENTIFIER>
InChI=1S/C7H14NO9P/c8-3(7(12)13)1-4(9)6(11)5(10)2-17-18(14,15)16/h3-4,6,9,11H,1-2,8H2,(H,12,13)(H2,14,15,16)/p-2

> <INCHI_KEY>
OABFYXXSGQYCAM-UHFFFAOYSA-L

> <FORMULA>
C7H12NO9P

> <MOLECULAR_WEIGHT>
285.146

> <EXACT_MASS>
285.026065128

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
22.72598210395364

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
-2

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-amino-7-(hydrogen phosphonooxy)-4,5-dihydroxy-6-oxoheptanoate

> <JCHEM_LOGP>
-4.599368741480911

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
1.881655618658753

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.0375812229302612

> <JCHEM_PKA_STRONGEST_BASIC>
8.649220150871699

> <JCHEM_POLAR_SURFACE_AREA>
193.26999999999998

> <JCHEM_REFRACTIVITY>
64.5404

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-amino-7-(hydrogen phosphonooxy)-4,5-dihydroxy-6-oxoheptanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.208   0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.207   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.875  -0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.541   0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.206   0.770   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       1.540  -1.540   0.000  0.00  0.00           N+0
HETATM    9  O   UNK     0       4.207  -1.540   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       6.875  -1.540   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       5.541   2.310   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -1.127   0.000   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       0.206   2.310   0.000  0.00  0.00           O-1
HETATM   14  O   UNK     0      12.209   1.540   0.000  0.00  0.00           O-1
HETATM   15  O   UNK     0      11.646  -0.564   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      10.106   2.104   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       9.542   0.000   0.000  0.00  0.00           O+0
HETATM   18  P   UNK     0      10.876   0.770   0.000  0.00  0.00           P+0
CONECT    1    3    4                                                       
CONECT    2    5   17                                                       
CONECT    3    1    7    8                                                  
CONECT    4    1    6    9                                                  
CONECT    5    2    6   10                                                  
CONECT    6    4    5   11                                                  
CONECT    7    3   12   13                                                  
CONECT    8    3                                                            
CONECT    9    4                                                            
CONECT   10    5                                                            
CONECT   11    6                                                            
CONECT   12    7                                                            
CONECT   13    7                                                            
CONECT   14   18                                                            
CONECT   15   18                                                            
CONECT   16   18                                                            
CONECT   17    2   18                                                       
CONECT   18   14   15   16   17                                             
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

Synonyms

Value	Source
2-Ammonio-4,5-dihydroxy-6-oxo-7-(phosphonatooxy)heptanoate	ChEBI
2-Ammonio-4,5-dihydroxy-6-oxo-7-(phosphonatooxy)heptanoic acid	Generator
2-Amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoic acid	Generator

Chemical Formula

C₇H₁₂NO₉P

Average Molecular Weight

285.146

Monoisotopic Molecular Weight

285.026065128

IUPAC Name

2-amino-7-(hydrogen phosphonooxy)-4,5-dihydroxy-6-oxoheptanoate

Traditional Name

2-amino-7-(hydrogen phosphonooxy)-4,5-dihydroxy-6-oxoheptanoate

CAS Registry Number

Not Available

SMILES

NC(CC(O)C(O)C(=O)COP(O)([O-])=O)C([O-])=O

InChI Identifier

InChI=1S/C7H14NO9P/c8-3(7(12)13)1-4(9)6(11)5(10)2-17-18(14,15)16/h3-4,6,9,11H,1-2,8H2,(H,12,13)(H2,14,15,16)/p-2

InChI Key

OABFYXXSGQYCAM-UHFFFAOYSA-L

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon).

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Alpha amino acids

Alternative Parents

Substituents

Alpha-amino acid
Glycerone phosphate
Medium-chain keto acid
Acyloin
Beta-hydroxy ketone
Monosaccharide
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Alpha-hydroxy ketone
1,3-aminoalcohol
Amino acid
Secondary alcohol
Carboxylic acid salt
Ketone
1,2-diol
Carboxylic acid
Monocarboxylic acid or derivatives
Primary amine
Organooxygen compound
Primary aliphatic amine
Organic oxygen compound
Organic salt
Hydrocarbon derivative
Carbonyl group
Organic oxide
Amine
Organopnictogen compound
Organic nitrogen compound
Alcohol
Organonitrogen compound
Organic anion
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

organophosphate oxoanion (CHEBI:58898 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	-4.6	ChemAxon
pKa (Strongest Acidic)	1.04	ChemAxon
pKa (Strongest Basic)	8.65	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	193.27 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	64.54 m³·mol⁻¹	ChemAxon
Polarizability	22.73 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Proteins

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Related Health Condition	Evidence Type	Measured in Matrix	Data Source	Reference

Microbial Sources

Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
	Actinobacteria	2

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference	Details

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

26331424

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

46878474

PDB ID

Not Available

ChEBI ID

58898

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoic acid (MMDBc0055208)

MOL for #<Metabolite:0x0000564abf755098>

3D MOL for #<Metabolite:0x0000564abf755098>

3D SDF for #<Metabolite:0x0000564abf755098>

3D-SDF for #<Metabolite:0x0000564abf755098>

PDB for #<Metabolite:0x0000564abf755098>

3D PDB for #<Metabolite:0x0000564abf755098>

SMILES for #<Metabolite:0x0000564abf755098>

INCHI for #<Metabolite:0x0000564abf755098>

Structure for #<Metabolite:0x0000564abf755098>

3D Structure for #<Metabolite:0x0000564abf755098>