MiMeDB: Showing metabocard for 2'-Deoxyguanosine 3'-phosphate (MMDBc0057195)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-11-09 20:25:14 UTC

Update Date

2022-11-09 20:25:14 UTC

MiMeDB ID

MMDBc0057195

Metabolite Identification

Common Name

2'-Deoxyguanosine 3'-phosphate

Description

2'-deoxyguanosine 3'-monophosphate belongs to the class of organic compounds known as ribonucleoside 3'-phosphates. These are ribonucleosides that contain a phosphate group attached to the C-3 carbon of the ribose or deoxyribose moiety. The nucleobases here are limited to purine, pyrimidine, and pyridine derivatives. 2'-deoxyguanosine 3'-monophosphate is a strong basic compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
2'-Deoxyguanosine 3'-(dihydrogen phosphate)	ChEBI
2'-Deoxyguanosine 3'-phosphate	ChEBI
2'-Deoxyguanosine 3'-(dihydrogen phosphoric acid)	Generator
2'-Deoxyguanosine 3'-phosphoric acid	Generator
2'-Deoxyguanosine 3'-monophosphoric acid	Generator
2'-DG-3'-MP	MeSH

Chemical Formula

C₁₀H₁₄N₅O₇P

Average Molecular Weight

347.2212

Monoisotopic Molecular Weight

347.063084339

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C10H14N5O7P/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(5(2-16)21-6)22-23(18,19)20/h3-6,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1

InChI Key

QQMSZHORHNORLP-KVQBGUIXSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as ribonucleoside 3'-phosphates. These are ribonucleosides that contain a phosphate group attached to the C-3 carbon of the ribose or deoxyribose moiety. The nucleobases here are limited to purine, pyrimidine, and pyridine derivatives.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Ribonucleoside 3'-phosphates

Sub Class

Not Available

Direct Parent

Ribonucleoside 3'-phosphates

Alternative Parents

Substituents

Ribonucleoside 3'-phosphate
6-oxopurine
Hypoxanthine
Imidazopyrimidine
Purine
Aminopyrimidine
Pyrimidone
Monoalkyl phosphate
N-substituted imidazole
Organic phosphoric acid derivative
Phosphoric acid ester
Pyrimidine
Alkyl phosphate
Azole
Imidazole
Heteroaromatic compound
Vinylogous amide
Tetrahydrofuran
Azacycle
Oxacycle
Organoheterocyclic compound
Primary alcohol
Organooxygen compound
Organonitrogen compound
Amine
Organic nitrogen compound
Organic oxide
Organic oxygen compound
Organopnictogen compound
Primary amine
Alcohol
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

purine 2'-deoxyribonucleoside 3'-monophosphate (CHEBI:39935 )
deoxyguanosine phosphate (CHEBI:39935 )

Functional Ontology

Not Available

Physical Properties

State

Not Available

Predicted Properties

Not Available

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Proteins

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Related Health Condition	Evidence Type	Measured in Matrix	Data Source	Reference

Microbial Sources

Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference	Details

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

93023

PDB ID

3PD

ChEBI ID

55553

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 2'-Deoxyguanosine 3'-phosphate (MMDBc0057195)

MOL for #<Metabolite:0x000055b76aeae968>

3D MOL for #<Metabolite:0x000055b76aeae968>

3D SDF for #<Metabolite:0x000055b76aeae968>

3D-SDF for #<Metabolite:0x000055b76aeae968>

PDB for #<Metabolite:0x000055b76aeae968>

3D PDB for #<Metabolite:0x000055b76aeae968>

SMILES for #<Metabolite:0x000055b76aeae968>

INCHI for #<Metabolite:0x000055b76aeae968>

Structure for #<Metabolite:0x000055b76aeae968>

3D Structure for #<Metabolite:0x000055b76aeae968>