MiMeDB: Clostridioides difficile (MMDBm0000108)

Microbe Identification

Microbe name

Clostridioides difficile

NCBI Taxonomy ID

1496

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Firmicutes

Class

Clostridia

Order

Clostridiales

Family

Peptostreptococcaceae

Genus

Clostridioides

Species

difficile

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Not Available

Mobility

Not Available

Flagellar presence

Not Available

Number of membranes

Not Available

Oxygen requirements

Not Available

Optimal temperature

Not Available

Temperature range

Not Available

Habitat

Not Available

Biotic relationship

Not Available

Cell arrangement

Not Available

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Data Source	Reference
Human	Gut	Feces	GutFeeling KnowledgeBase	PMID: 31509535
Goat	Gut	Feces	GutFeeling KnowledgeBase	PMID: 31509535
Sheep	Gut	Feces	GutFeeling KnowledgeBase	PMID: 31509535
Human	Gut	Feces	Shabana 2020: sheep and goat	https://doi.org/10.1080/16583655.2020.1864930
Goat	Gut	Feces	Shabana 2020: sheep and goat	https://doi.org/10.1080/16583655.2020.1864930
Sheep	Gut	Feces	Shabana 2020: sheep and goat	https://doi.org/10.1080/16583655.2020.1864930
Human	Gut	Feces	Shabana 2020: sheep and goat	https://doi.org/10.1080/16583655.2020.1864930
Goat	Gut	Feces	Shabana 2020: sheep and goat	https://doi.org/10.1080/16583655.2020.1864930
Sheep	Gut	Feces	Shabana 2020: sheep and goat	https://doi.org/10.1080/16583655.2020.1864930

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012860	(2R)-2-phosphoglyceric acid	Water	Enolase	Enolization	RHEA	34755880
MMDBr0012876	Deoxyuridine triphosphate	diphosphate	Probable deoxyuridine 5'-triphosphate nucleotidohydrolase	Dephosphorylation; Nucleotidohydrolase	RHEA	34755880
MMDBr0013391	Water	alpha-Ketoglutarate	NAD-specific glutamate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013505	(S)-3-Hydroxybutanoyl-CoA	Acetoacetyl-CoA	3-hydroxybutyryl-CoA dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013766	Acetyl-CoA	chloramphenicol 3-acetic acid	Chloramphenicol acetyltransferase	Acetyltransferase	RHEA	34755880
MMDBr0014062	Acetyl-CoA	Acetoacetyl-CoA	Acetyl-CoA acetyltransferase	Acetyltransferase; Acylation; Ketothiolase	RHEA	34755880
MMDBr0014240	p-Hydroxyphenylacetic acid	p-Cresol	4-hydroxyphenylacetate decarboxylase glycyl radical subunit	Decarboxylation	RHEA	34755880
MMDBr0014241	p-Hydroxyphenylacetic acid	p-Cresol	4-hydroxyphenylacetate decarboxylase glycyl radical subunit	Decarboxylation	RHEA	34755880
MMDBr0016264	(R)-2-hydroxy-4-methylpentanoyl-CoA	4-methylpent-2-enoyl-CoA	(R)-2-hydroxyisocaproyl-CoA dehydratase alpha subunit	Dehydratase	RHEA	34755880
MMDBr0016751	4-Hydroxyproline	1-Pyrroline-5-carboxylic acid	Trans-4-hydroxy-L-proline dehydratase	Dehydratase	RHEA	34755880
MMDBr0017243	3,4-Dihydroxybenzeneacetic acid	4-Methylcatechol	4-hydroxyphenylacetate decarboxylase glycyl radical subunit	Decarboxylation	RHEA	34755880
MMDBr0017244	3,4-Dihydroxybenzeneacetic acid	4-Methylcatechol	4-hydroxyphenylacetate decarboxylase glycyl radical subunit	Decarboxylation	RHEA	34755880
MMDBr0017251	2-hydroxy-2-(4-hydroxyphenyl)acetic acid	4-Hydroxybenzyl alcohol	4-hydroxyphenylacetate decarboxylase glycyl radical subunit	Decarboxylation	RHEA	34755880
MMDBr0017252	2-hydroxy-2-(4-hydroxyphenyl)acetic acid	4-Hydroxybenzyl alcohol	4-hydroxyphenylacetate decarboxylase glycyl radical subunit	Decarboxylation	RHEA	34755880
MMDBr0017835	L-Proline	D-Proline	Proline racemase		RHEA	34755880
MMDBr0025766	Glycine	Hydrogen Ion	Putative glycyl-radical enzyme activating enzyme MJ1227		RHEA	34755880
MMDBr0025875	L-Threonine	Hydrogen Ion	Cytotoxin-L		RHEA	34755880
MMDBr0025876	L-Threonine	Hydrogen Ion	Cytotoxin-L		RHEA	34755880

Genome Data

Genome Link

Not Available

Genome Length

Not Available

# Predicted Proteins

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

Reference

PMID: 17704766

Source Links

GenBank