| MMDBm0000024 | Bacillus altitudinis 41KF2b | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000094 | Blautia obeum ATCC 29174 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000108 | Clostridioides difficile | Not Available | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0000112 | Clostridioides difficile R20291 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000119 | Clostridium botulinum | Not Available | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0000120 | Clostridium botulinum A str. ATCC 19397 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000121 | Clostridium botulinum Bf | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000122 | Clostridium botulinum F str. 230613 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000157 | Enterococcus hirae ATCC 9790 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000187 | Gemella sanguinis ATCC700632 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000432 | Streptococcus sanguinis | Not Available | Firmicutes | Human | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0000793 | Clostridium hiranonis | Not Available | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001027 | Acetoanaerobium sticklandii | Not Available | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0001116 | Granulicatella | Not Available | Firmicutes | Not Available | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001125 | Subdoligranulum | Not Available | Firmicutes | Not Available | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001459 | Clostridium botulinum A str. ATCC 3502 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0001460 | Clostridium botulinum A str. Hall | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0001470 | Clostridium difficile CD196 | Not Available | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0001473 | Clostridium sticklandii DSM 519 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002107 | Megasphaera elsdenii DSM 20460 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002188 | Filifactor alocis ATCC 35896 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0730456 | Bacillus fordii DSM 16014 = CIP 108821 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0761370 | Geobacillus vulcani PSS1 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0766846 | Aneurinibacillus aneurinilyticus ATCC 12856 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0784091 | Gemella morbillorum M424 | Not Available | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
